diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-03-23 07:20:14 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-03-23 07:20:14 +0000 |
| commit | c22eac9221fe326d111f2306513db8efc7a491ed (patch) | |
| tree | df61fa1a81f8ac2fb924db08e843a8e0c8752c0e /sci-biology/bowtie | |
| parent | Version bump. Better compatibility with Rails 3. (diff) | |
| download | gentoo-2-c22eac9221fe326d111f2306513db8efc7a491ed.tar.gz gentoo-2-c22eac9221fe326d111f2306513db8efc7a491ed.tar.bz2 gentoo-2-c22eac9221fe326d111f2306513db8efc7a491ed.zip | |
Version bump, drop old versions
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.12.3.ebuild (renamed from sci-biology/bowtie/bowtie-0.10.0.ebuild) | 6 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.9.9.2.ebuild | 29 |
3 files changed, 12 insertions, 33 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index 4e0b7f54301c..a31434552b36 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/bowtie -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.7 2009/09/22 11:43:28 maekke Exp $ +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.8 2010/03/23 07:20:14 weaver Exp $ + +*bowtie-0.12.3 (23 Mar 2010) + + 23 Mar 2010; Andrey Kislyuk <weaver@gentoo.org> -bowtie-0.9.9.2.ebuild, + -bowtie-0.10.0.ebuild, +bowtie-0.12.3.ebuild: + Version bump, drop old versions 22 Sep 2009; Markus Meier <maekke@gentoo.org> bowtie-0.10.1.ebuild: x86 stable, bug #282110 diff --git a/sci-biology/bowtie/bowtie-0.10.0.ebuild b/sci-biology/bowtie/bowtie-0.12.3.ebuild index f38f49aa0c0f..73f28a9f46fe 100644 --- a/sci-biology/bowtie/bowtie-0.10.0.ebuild +++ b/sci-biology/bowtie/bowtie-0.12.3.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.0.ebuild,v 1.1 2009/06/21 15:15:43 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.3.ebuild,v 1.1 2010/03/23 07:20:14 weaver Exp $ EAPI="2" @@ -25,6 +25,8 @@ src_prepare() { src_install() { dobin bowtie bowtie-* || die + exeinto /usr/share/${PN}/scripts + doexe scripts/* || die newman MANUAL bowtie.1 dodoc AUTHORS NEWS TUTORIAL } diff --git a/sci-biology/bowtie/bowtie-0.9.9.2.ebuild b/sci-biology/bowtie/bowtie-0.9.9.2.ebuild deleted file mode 100644 index cf7feed786d4..000000000000 --- a/sci-biology/bowtie/bowtie-0.9.9.2.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.9.9.2.ebuild,v 1.1 2009/05/02 23:48:39 weaver Exp $ - -EAPI="2" - -DESCRIPTION="An ultrafast memory-efficient short read aligner" -HOMEPAGE="http://bowtie-bio.sourceforge.net/" -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86" - -DEPEND="app-arch/unzip" -RDEPEND="" - -# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) - -src_prepare() { - sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die -} - -src_install() { - dobin bowtie bowtie-* || die - newman MANUAL bowtie.1 - dodoc AUTHORS NEWS TUTORIAL -} |