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authorOlivier Fisette <ribosome@gentoo.org>2006-01-21 17:22:09 +0000
committerOlivier Fisette <ribosome@gentoo.org>2006-01-21 17:22:09 +0000
commit30f5d59840a299eae53b3d13d669a41018dc57c2 (patch)
tree8ea3ab8b5009f4ac8fb82ed906e292189c7252be /sci-biology
parentVersion Bump. (diff)
downloadgentoo-2-30f5d59840a299eae53b3d13d669a41018dc57c2.tar.gz
gentoo-2-30f5d59840a299eae53b3d13d669a41018dc57c2.tar.bz2
gentoo-2-30f5d59840a299eae53b3d13d669a41018dc57c2.zip
Removed obsolete/buggy versions
(Portage version: 2.0.53)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog6
-rw-r--r--sci-biology/rebase/files/digest-rebase-5091
-rw-r--r--sci-biology/rebase/files/digest-rebase-5111
-rw-r--r--sci-biology/rebase/files/digest-rebase-6011
-rw-r--r--sci-biology/rebase/rebase-509.ebuild39
-rw-r--r--sci-biology/rebase/rebase-511.ebuild41
-rw-r--r--sci-biology/rebase/rebase-601.ebuild41
7 files changed, 5 insertions, 125 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index f7c2a8b74e07..91ecb7231073 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/rebase
# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.52 2006/01/21 17:19:43 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.53 2006/01/21 17:22:09 ribosome Exp $
+
+ 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> -rebase-509.ebuild,
+ -rebase-511.ebuild, -rebase-601.ebuild:
+ Removed obsolete/buggy versions.
*rebase-601-r1 (21 Jan 2006)
diff --git a/sci-biology/rebase/files/digest-rebase-509 b/sci-biology/rebase/files/digest-rebase-509
deleted file mode 100644
index 744a2563e1f0..000000000000
--- a/sci-biology/rebase/files/digest-rebase-509
+++ /dev/null
@@ -1 +0,0 @@
-MD5 4ae7f46adea8c9ba0cf79c67f10e60b9 rebase-509.tar.bz2 180114
diff --git a/sci-biology/rebase/files/digest-rebase-511 b/sci-biology/rebase/files/digest-rebase-511
deleted file mode 100644
index d8851851fd15..000000000000
--- a/sci-biology/rebase/files/digest-rebase-511
+++ /dev/null
@@ -1 +0,0 @@
-MD5 6b53178dba38317b0173943213e745b2 rebase-511.tar.bz2 181327
diff --git a/sci-biology/rebase/files/digest-rebase-601 b/sci-biology/rebase/files/digest-rebase-601
deleted file mode 100644
index 514623f4bd95..000000000000
--- a/sci-biology/rebase/files/digest-rebase-601
+++ /dev/null
@@ -1 +0,0 @@
-MD5 473a812ec6119fb8b02ac3e0bfec6884 rebase-601.tar.bz2 181829
diff --git a/sci-biology/rebase/rebase-509.ebuild b/sci-biology/rebase/rebase-509.ebuild
deleted file mode 100644
index 223a65c7f8a0..000000000000
--- a/sci-biology/rebase/rebase-509.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-509.ebuild,v 1.6 2005/11/19 18:22:16 blubb Exp $
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-LICENSE="public-domain"
-
-SLOT="0"
-KEYWORDS="amd64 ppc ppc-macos ppc64 x86"
-IUSE="emboss minimal"
-# Minimal build keeps only the indexed files (if applicable) and the documentation.
-# The non-indexed database is not installed.
-
-DEPEND="emboss? ( sci-biology/emboss )"
-
-src_compile() {
- if use emboss; then
- echo
- einfo "Indexing ${PN} for usage with EMBOSS."
- mkdir REBASE
- EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
- -protofile proto.${PV} || die "Indexing ${PN} failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${PV} proto.${PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/{embossre.enz,embossre.ref,embossre.sup}
- fi
-}
diff --git a/sci-biology/rebase/rebase-511.ebuild b/sci-biology/rebase/rebase-511.ebuild
deleted file mode 100644
index e6c10fff248f..000000000000
--- a/sci-biology/rebase/rebase-511.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-511.ebuild,v 1.5 2005/12/24 00:01:29 blubb Exp $
-
-DESCRIPTION="A restriction enzyme database"
-LICENSE="public-domain"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="amd64 ppc ~ppc-macos ppc64 x86"
-
-DEPEND="emboss? ( sci-biology/emboss )"
-
-src_compile() {
- if use emboss; then
- echo
- einfo "Indexing ${PN} for usage with EMBOSS."
- mkdir REBASE
- EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
- -protofile proto.${PV} || die "Indexing ${PN} failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${PV} proto.${PV} || die \
- "Failed to install raw database."
- fi
- newdoc REBASE.DOC README || die "Failed to install documentation."
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \
- "Failed to install EMBOSS data files."
- fi
-}
diff --git a/sci-biology/rebase/rebase-601.ebuild b/sci-biology/rebase/rebase-601.ebuild
deleted file mode 100644
index f1a9ebf3bdbb..000000000000
--- a/sci-biology/rebase/rebase-601.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-601.ebuild,v 1.1 2006/01/07 04:05:10 ribosome Exp $
-
-DESCRIPTION="A restriction enzyme database"
-LICENSE="public-domain"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
-
-DEPEND="emboss? ( sci-biology/emboss )"
-
-src_compile() {
- if use emboss; then
- echo
- einfo "Indexing ${PN} for usage with EMBOSS."
- mkdir REBASE
- EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
- -protofile proto.${PV} || die "Indexing ${PN} failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${PV} proto.${PV} || die \
- "Failed to install raw database."
- fi
- newdoc REBASE.DOC README || die "Failed to install documentation."
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \
- "Failed to install EMBOSS data files."
- fi
-}