diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/abyss/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/abyss/abyss-1.3.3.ebuild | 35 |
2 files changed, 42 insertions, 2 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog index 0f7d4e0f7817..7d16878ef343 100644 --- a/sci-biology/abyss/ChangeLog +++ b/sci-biology/abyss/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/abyss -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.11 2011/09/24 21:48:12 weaver Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.12 2012/05/29 02:44:21 weaver Exp $ + +*abyss-1.3.3 (29 May 2012) + + 29 May 2012; Andrey Kislyuk <weaver@gentoo.org> +abyss-1.3.3.ebuild: + version bump *abyss-1.3.0 (24 Sep 2011) diff --git a/sci-biology/abyss/abyss-1.3.3.ebuild b/sci-biology/abyss/abyss-1.3.3.ebuild new file mode 100644 index 000000000000..edc248a34395 --- /dev/null +++ b/sci-biology/abyss/abyss-1.3.3.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.3.ebuild,v 1.1 2012/05/29 02:44:21 weaver Exp $ + +EAPI="4" + +inherit autotools + +DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/" +SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" + +LICENSE="abyss" +SLOT="0" +IUSE="+mpi openmp" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + dev-cpp/sparsehash + mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +# todo: --enable-maxk=N configure option +# todo: fix automagic mpi toggling + +src_prepare() { + sed -i -e "s/-Werror//" configure.ac || die #365195 + sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die + eautoreconf +} + +src_configure() { + econf \ + $(use_enable openmp) +} |