diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/hmmer/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch | 18 |
2 files changed, 15 insertions, 8 deletions
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog index 423104f09bd4..eed761671330 100644 --- a/sci-biology/hmmer/ChangeLog +++ b/sci-biology/hmmer/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/hmmer # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.32 2012/06/25 06:23:12 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.33 2012/06/28 16:34:57 jlec Exp $ + + 28 Jun 2012; Justin Lecher <jlec@gentoo.org> files/hmmer-3.0-perl-5.16.patch: + Fix patch, screwed VCS tags, #423983 25 Jun 2012; Justin Lecher <jlec@gentoo.org> hmmer-3.0.ebuild, +files/hmmer-3.0-perl-5.16.patch, metadata.xml: diff --git a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch index 08144c2885e2..c6ba6da03776 100644 --- a/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch +++ b/sci-biology/hmmer/files/hmmer-3.0-perl-5.16.patch @@ -28,7 +28,7 @@ index a4dc126..b61fa7a 100755 +++ b/easel/devkit/esl-dependencies @@ -13,8 +13,8 @@ # SRE, Mon Jun 11 11:15:31 2007 - # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ + # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ -require "getopts.pl" -&Getopts('1afr'); @@ -43,7 +43,7 @@ index af3adf6..0cdb458 100755 +++ b/easel/devkit/sqc @@ -205,12 +205,11 @@ # SRE, Tue Aug 6 11:16:39 2002 - # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ + # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ -require "getopts.pl"; -require "importenv.pl"; @@ -66,13 +66,15 @@ index af3adf6..0cdb458 100755 foreach $suffix ("aa".."zz") { $name = "$dir"."esltmp".$suffix.$$; diff --git a/easel/testsuite/coverage_report.pl b/easel/testsuite/coverage_report.pl -index 9c77791..024ed34 100755 +old mode 100755 +new mode 100644 +index 9c77791..024ed34 --- a/easel/testsuite/coverage_report.pl +++ b/easel/testsuite/coverage_report.pl @@ -16,9 +16,9 @@ # # SRE, Thu Mar 1 19:22:57 2007 (Janelia) - # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ + # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ -require "getopts.pl"; +use Getopt::Std; $have_sloccount = 1; @@ -87,7 +89,7 @@ index 757854d..a9a8902 100755 +++ b/easel/testsuite/driver_report.pl @@ -25,8 +25,8 @@ # SRE, Fri Mar 2 10:01:44 2007 (Janelia) - # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ + # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ -require "getopts.pl"; -&Getopts('c'); @@ -97,13 +99,15 @@ index 757854d..a9a8902 100755 if ($ENV{'CC'} ne "") { $CC = $ENV{'CC'}; } else { $CC = "gcc"; } diff --git a/easel/testsuite/valgrind_report.pl b/easel/testsuite/valgrind_report.pl -index 186a392..07026a0 100755 +old mode 100755 +new mode 100644 +index 186a392..07026a0 --- a/easel/testsuite/valgrind_report.pl +++ b/easel/testsuite/valgrind_report.pl @@ -10,8 +10,8 @@ # # SRE, Fri Mar 2 08:37:48 2007 [Janelia] - # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.1 2012/06/25 06:23:12 jlec Exp $ + # SVN $Id: hmmer-3.0-perl-5.16.patch,v 1.2 2012/06/28 16:34:57 jlec Exp $ -require "getopts.pl"; -&Getopts('c'); +use Getopt::Std; |