# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.1 2010/09/17 20:43:01 arfrever Exp $ EAPI="3" PYTHON_DEPEND="2" SUPPORT_PYTHON_ABIS="1" RESTRICT_PYTHON_ABIS="3.*" inherit distutils eutils DESCRIPTION="Biopython - Python modules for computational molecular biology" HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython" SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" LICENSE="as-is" SLOT="0" KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86" IUSE="mysql postgres" RDEPEND="dev-python/numpy >=dev-python/reportlab-2.0 mysql? ( dev-python/mysql-python ) postgres? ( dev-python/psycopg )" DEPEND="${RDEPEND} sys-devel/flex" PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" DOCS="CONTRIB DEPRECATED NEWS README" PYTHON_MODNAME="Bio BioSQL" src_prepare() { distutils_src_prepare epatch "${FILESDIR}/${PN}-1.51-flex.patch" } src_test() { testing() { cd Tests PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py } python_execute_function --nonfatal -s testing } src_install() { distutils_src_install insinto /usr/share/doc/${PF} doins -r Doc/* || die "Installation of documentation failed" insinto /usr/share/${PN} cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" }