# Copyright 1999-2012 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2.ebuild,v 1.11 2012/03/07 19:33:39 jlec Exp $ EAPI=3 PYTHON_DEPEND="2" inherit autotools base eutils flag-o-matic python toolchain-funcs versionator MY_S2_PV=$(replace_version_separator 2 - ${PV}) MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1} MY_S_P=${MY_S2_P}-${PR/r/revision-} MY_PV=${PV} MY_P=${PN}-${MY_PV} DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation" HOMEPAGE="http://www.biop.ox.ac.uk/coot/" SRC_URI=" http://www.biop.ox.ac.uk/coot/software/source/releases/${MY_P}.tar.gz test? ( http://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )" SLOT="0" LICENSE="GPL-3" KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" IUSE="+openmp test" SCIDEPS=" >=sci-libs/ccp4-libs-6.1 >=sci-libs/clipper-20090520 >=sci-libs/coot-data-2 >=sci-libs/gsl-1.3 >=sci-libs/mmdb-1.23 sci-libs/ssm <sci-libs/monomer-db-1 sci-chemistry/reduce <sci-chemistry/refmac-5.6 sci-chemistry/probe" XDEPS=" gnome-base/libgnomecanvas gnome-base/librsvg:2 media-libs/libpng media-libs/freeglut x11-libs/gtk+:2 x11-libs/gtkglext" SCHEMEDEPS=" dev-scheme/net-http dev-scheme/guile-gui >=dev-scheme/guile-lib-0.1.6 dev-scheme/guile-www >=x11-libs/guile-gtk-2.1" RDEPEND=" ${SCIDEPS} ${XDEPS} ${SCHEMEDEPS} dev-python/pygtk:2 >=dev-libs/gmp-4.2.2-r2 >=net-misc/curl-7.19.6 net-dns/libidn" DEPEND="${RDEPEND} dev-lang/swig sys-devel/bc test? ( dev-scheme/greg )" S="${WORKDIR}/${MY_P}" pkg_setup() { if use openmp; then tc-has-openmp || die "Please use an OPENMP capable compiler" has_version '<sys-devel/libtool-2.4-r2' && append-ldflags $(no-as-needed) fi python_set_active_version 2 } PATCHES=( "${FILESDIR}"/${PV}-clipper-config.patch "${FILESDIR}"/${PV}-mmdb-config.patch "${FILESDIR}"/${PV}-gl.patch "${FILESDIR}"/${PV}-test.patch "${FILESDIR}"/${PV}-ssm.patch "${FILESDIR}"/${PV}-libpng15.patch ) src_prepare() { sed \ -e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \ -i configure.in || die base_src_prepare eautoreconf } src_configure() { # All the --with's are used to activate various parts. # Yes, this is broken behavior. econf \ --includedir='${prefix}/include/coot' \ --with-gtkcanvas-prefix="${EPREFIX}/usr" \ --with-gtkgl-prefix="${EPREFIX}/usr" \ --with-guile \ --with-python="${EPREFIX}/usr" \ --with-guile-gtk \ --with-gtk2 \ --with-pygtk \ $(use_enable openmp) } src_compile() { emake || die "emake failed" python_convert_shebangs $(python_get_version) src/coot_gtk2.py cp "${S}"/src/coot_gtk2.py python/coot.py || die } src_test() { source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh" mkdir "${T}"/coot_test export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb" export COOT_SCHEME_DIR="${S}/scheme/" export COOT_RESOURCES_FILE="${S}/cootrc" export COOT_PIXMAPS_DIR="${S}/pixmaps" export COOT_DATA_DIR="${S}" export COOT_PYTHON_DIR="${S}/python" export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}" export PYTHONHOME="${EPREFIX}"/usr export CCP4_SCR="${T}"/coot_test export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/" export SYMINFO="${S}/syminfo.lib" export COOT_TEST_DATA_DIR="${WORKDIR}"/data/greg-data cat > command-line-greg.scm <<- EOF (use-modules (ice-9 greg)) (set! greg-tools (list "greg-tests")) (set! greg-debug #t) (set! greg-verbose 5) (let ((r (greg-test-run))) (if r (coot-real-exit 0) (coot-real-exit 1))) EOF einfo "Running test with following paths ..." einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES" einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR" einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE" einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR" einfo "COOT_DATA_DIR $COOT_DATA_DIR" einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR" einfo "PYTHONPATH $PYTHONPATH" einfo "PYTHONHOME $PYTHONHOME" einfo "CCP4_SCR ${CCP4_SCR}" einfo "CLIBD_MON ${CLIBD_MON}" einfo "SYMINFO ${SYMINFO}" "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die "${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die }