Migrate to git-2.

Package-Manager: portage-2.2.0_alpha59/cvs/Linux x86_64
Manifest-Sign-Key: 0x42B9401D

5 files changed, 45 insertions, 35 deletions

diff --git a/sci-biology/bioperl-db/Manifest b/sci-biology/bioperl-db/Manifest
index 8c06314d31f5..f69477a6f0e1 100644
--- a/sci-biology/bioperl-db/Manifest
+++ b/sci-biology/bioperl-db/Manifest
@@ -1,17 +1,19 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
 DIST BioPerl-DB-1.006900.tar.gz 492799 RMD160 28e53c747022e0f91485370c4ab03a3fb4c0480c SHA1 4a4508dced08aac65cc362148fd597fddbec1cf9 SHA256 50df2447b7f3e26aebcf02ed7344d3ef562c3f5393c1584a8ae086185c8c9139
 DIST BioPerl-db-1.6.0.tar.bz2 296041 RMD160 6cae2b39b4e46b30f7f378e22ca565fb9f9cfbeb SHA1 7bbfe5ef163dca332531372dd728161e89bd7bb8 SHA256 81710b9c6d021511b8ad19d106309f76ef3111015873a56af9b109902d24a699
 EBUILD bioperl-db-1.6.0.ebuild 934 RMD160 3174e0d009ef1a97f67afb510156b0c0f07ede03 SHA1 bc1de7c9c854933a884fdcb977ef2c225b8bdf91 SHA256 09aadf2bd39f97517e6743bcc179812133f7f35bf5feabf3dd21f5a638c374a5
 EBUILD bioperl-db-1.6.9.ebuild 739 RMD160 d94c2a0e0c3dfb6fc8fe07e80295b4c7a43876c1 SHA1 b51cb6a0685a815f9b0342c37d87d936a894f378 SHA256 9ffd2a0f5c5b3d1e558085697955f1c5bcecd82f586da7d89c4ba249c067f8cf
-EBUILD bioperl-db-9999-r1.ebuild 934 RMD160 d54adbeb27dea092acc00011df5413f17502683a SHA1 8333aebcccfd6541eac7d5da5883da079d52562f SHA256 b9ab055cf75c3748f4ea8dd7f5426e85d036baa34002bac7710cea5e0b03837e
-MISC ChangeLog 1205 RMD160 c5b6a503673d3ef9bd035801b66212f0b1b38e3d SHA1 58d44aa8a220e5cfb76c696ddd057e4eef7ec3ea SHA256 522f6bfbc3e18ea86eb1b9e59b984dd88fe396f7ef614f61573c3f76843cec9f
+EBUILD bioperl-db-9999-r1.ebuild 974 RMD160 0695f2906a63cb683bf6cf29e1df52a68a7ca36f SHA1 859c8114d45a84ab0cacb822c2c570b3a52b5890 SHA256 5f971ba06d967c42747e0d701e052e4053e09836bfad66218299754d566e86d9
+MISC ChangeLog 1303 RMD160 94889c5c6b669f4f1c2c56dce10c9710f1b9f6c6 SHA1 3dcf43629e9014d44a731c20d88fc7cb388d48be SHA256 f524a793c542eb97fd2a7ba8c7f33e110118813e0efafbd410df6c017a26f4a0
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.11 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
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diff --git a/sci-biology/bioperl-network/Manifest b/sci-biology/bioperl-network/Manifest
index 69440a973a2c..e6aab08a85bd 100644
--- a/sci-biology/bioperl-network/Manifest
+++ b/sci-biology/bioperl-network/Manifest
@@ -1,17 +1,19 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
 DIST BioPerl-Network-1.006900.tar.gz 2198089 RMD160 777904a9615cc3932c2e4a226e559489169fd6a8 SHA1 c9db1573c3a41b23cd31be4bd32964651d7b12c2 SHA256 5b31ab7d048ee8e7bd6ba933f96b904d7ee06b46ab29c00276eca3513a77c32a
 DIST BioPerl-network-1.6.0.tar.bz2 902029 RMD160 d7152d5917849c40527c56ff07c956fd3c292a1d SHA1 5d5da9f329a97a47939038f6be91f6628c25213c SHA256 1f9e48d7bf1b563fef235eede9524f8446a0374b65c6bf522f3203ed61164cb3
 EBUILD bioperl-network-1.6.0.ebuild 780 RMD160 398e1681875664efb5df0de7d66d111672168c5d SHA1 ce80e7d52ba552d0f4fc6fa3a93bad8563eb8c83 SHA256 86b66bb3c29afa80280903fd09bac7220494b896ae1e53b8dddf1132f7e49ec1
 EBUILD bioperl-network-1.6.9.ebuild 747 RMD160 4ac796bcc6868bd06e4544d85dda9b1d12dd8c6f SHA1 b2b9ca4dcd48d84ffcdce29d3e037d028d231d6d SHA256 426936b83a5228a5f5dc6097ac21b7e8b93c568afc67b87102a8841ee86514ed
-EBUILD bioperl-network-9999-r1.ebuild 775 RMD160 48900a156e04e2593dcd1135e2c985d815a23662 SHA1 80ae3d4101b3bb425764ecbc2c780706b04ddcfb SHA256 07899d61fde10885d46032010699d88c263d1c04e069424a360dbc249f10e87f
-MISC ChangeLog 1284 RMD160 b6559f3a66a14c36c34e16560643e4436bbcf33d SHA1 a454ba774721bf12aefd6b0ead4dff5e6dc89c72 SHA256 75468859a5d6400151314e296bcdfd77adbf23dbe3ed5100ab65551c211f9508
+EBUILD bioperl-network-9999-r1.ebuild 815 RMD160 eb8a82d9365756d0c63691e13b9dc61c7551cd4e SHA1 b0e6733a9ec3fe7524dd4839a009cbefe8f39c3c SHA256 98e5c61ae1b5c7d10d628c02f6b4ff5225dfbcc0bac3fec0c3e727686c282959
+MISC ChangeLog 1389 RMD160 a1a0191d2280de412967fe4ebb9ec58e677d69c9 SHA1 be66ab00b13f907f7dd7935dd0953e9b65e7cd40 SHA256 4f89420b6db9ad0318614d61ab53ffda0633ea43a2c0a1f9cfcb24bbd1c99c35
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.11 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
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-=1F9Y
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 -----END PGP SIGNATURE-----
diff --git a/sci-biology/bioperl-run/Manifest b/sci-biology/bioperl-run/Manifest
index 82c5589dc22b..c1fb86c7fa0d 100644
--- a/sci-biology/bioperl-run/Manifest
+++ b/sci-biology/bioperl-run/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
 AUX bioperl-run-Pise-test-patch.diff 722 RMD160 85c3744bfc14db91971e4df2dfd967c5ad9f0310 SHA1 0498546ae9f12d0db5194c41a360910833870eac SHA256 84c8280f8d3af311b53c8b6edd4e6ffa9acc0824528d96d7f1c2537404d3e30f
 DIST BioPerl-Run-1.006900.tar.gz 14546677 RMD160 9de0a127462d7346d72248499bbe0db3e5d243b7 SHA1 1f514b87be99b93e9f04a4c905188d637f8cc60b SHA256 6eddca8aae38a139caaa0b28505e2ff3e919e8ed39b7539a662b0145f1f08d96
@@ -8,13 +8,15 @@ DIST bioperl-run-1.5.1.tar.gz 864369 RMD160 841e33cffda7b787b1700a075bf985c717d7
 EBUILD bioperl-run-1.5.1.ebuild 1288 RMD160 c3b8b7a28ef8ca2884e77ad5c125fb12a34db0be SHA1 97d54cb97995e08bd02deeafd8dd9c093b461a2b SHA256 d5b066528a330c5a88f1f4c9925185a7efbe7605d27b3ca7dc46e00046943aea
 EBUILD bioperl-run-1.6.1.ebuild 1105 RMD160 f99555fe437f930279cff805bc12e14151e8ae90 SHA1 e51f5523cffeded8aff7b01b6d2fa58529f1256a SHA256 beb92bf8a0385ae0111496401c599947ae80702eb529cfcbd4adc6cd5d7b3fc5
 EBUILD bioperl-run-1.6.9.ebuild 1090 RMD160 69a094ac004df6cb8149114393292f9e687a4f2f SHA1 15176d99be14f07c087adf19d5e7defc85591169 SHA256 e0f4fd2b34db3b192b1ae4720c24850b500e8b34234c62fbcddcbd36e405418b
-EBUILD bioperl-run-9999-r1.ebuild 1083 RMD160 4bd823c2c99499bd2d785a72e155412b001bf27f SHA1 7df9079774ba4e06ed68a087be592df0b5ab7edd SHA256 bb0847a9600cc3a6f6640fcff36b13cd63136196649ea0a8d3ea1c0ecdf1d5e1
-MISC ChangeLog 3957 RMD160 4c18ff707dbbe3eceb6377a83f2d4d946e23125c SHA1 8a383882056ecab90d180c67e608b70c718fd485 SHA256 b6bbb19fac3b578625019643ac3e04e9889d47dc8382b30dbb28e4089070ecad
+EBUILD bioperl-run-9999-r1.ebuild 1123 RMD160 df7a1e75cb7510c9ed9df1677e557155888f1d14 SHA1 8d1b233b00de0f84c5e9b0de77104a86bddc15c5 SHA256 5a4d1cff265ff82dcfb37d7ed042dc2f36e33409d12ef99f161d1a9988a2ab2c
+MISC ChangeLog 4056 RMD160 7e8d82add31f3b8cc9f5676da57af7c3b4417cac SHA1 922cc07f008301076253cbfbb72ae72b2ef1024c SHA256 5de2bc7b7f03166b293a81b847ef42baf81ace88dde6322f4b448eb7a7181392
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
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-Version: GnuPG v1.4.11 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
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-=Jwk9
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diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index c2d100c0383c..4bf8d76b30a1 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
 DIST BioPerl-1.6.0.tar.bz2 5640786 RMD160 89261afbbc3754a1dd78934b7b8b653593aa3427 SHA1 7b442ddcb02233c4cb9963a2ea883f755f6904bb SHA256 50a35b1b2552c8f54c83f2bbba7b36264e94443374b86b389208437c8cae3bf6
 DIST BioPerl-1.6.1.tar.bz2 6919711 RMD160 ffde5f89f5d66df0076a6a4acdf6afe79a9fa9b4 SHA1 2343d53b4c42e75f01f2fea2bb570b63db58957b SHA256 6c69a2c22b339b25e0545e2a52eee19c2aadd8ac062df259f64de22531f2ec57
@@ -9,13 +9,15 @@ EBUILD bioperl-1.5.1-r1.ebuild 1191 RMD160 1ad0bd41869118ce4482427e7de56829f7fe2
 EBUILD bioperl-1.6.0-r2.ebuild 1813 RMD160 4dc55408dc5a0868769a75a458e02de7fe3c28b5 SHA1 ba78721a68c3d15d8959373ec4a8b9f78945e145 SHA256 a126ac668e16c021ec4e2bc8722da8d4b536f49c10075f829bf44fd41e7b7349
 EBUILD bioperl-1.6.1.ebuild 2024 RMD160 d7a3a427bbf710c86abba4cbcb77943ac591be37 SHA1 d03427a93f4cbf62b68f7d9068ce0b2dfb641bf7 SHA256 52e757a92f8e699cceedc668cc0dbcf3db7f0577d6816af405d25dea6976eb11
 EBUILD bioperl-1.6.9.ebuild 1720 RMD160 4b8eb4ed010c865ddde87393835bbd908aa8868c SHA1 a27f52227c17d6335e89185de3924b8668ce0b18 SHA256 81e47a7f2e37d4af9894e26144dcb65544d6281083c0772203c6d12a73ed10c9
-EBUILD bioperl-9999-r1.ebuild 1908 RMD160 a63f4bc213454002b6599364754616b5d6f5d66c SHA1 d0aca16c4864dbd22720ae7113c7aca72eeb621b SHA256 6a323a7f2572ff46ae6cbdb972b5eb8a98eaed70ae49fe2e3f7daa5a7f819383
-MISC ChangeLog 8578 RMD160 3a3c9b29d9fe719f1423136f842a61380f67f54f SHA1 155688f4b454ebc48ed04d2d358ec993b5d102ef SHA256 68283606defd8b832b696c8c2057b1101abdcdca8f32d879a89adcfd139b018c
+EBUILD bioperl-9999-r1.ebuild 1951 RMD160 edc79edce46fd317ae537c9707204c145e005b2b SHA1 5f6ca0ba54f8af1e32f8427d684d868e6f8ee788 SHA256 a53656e9165bfaaa42ef30fc268531e9c1775380c59bdcb5ea0d3c16f51f8a24
+MISC ChangeLog 8673 RMD160 cfd17dab75c53780b85c621b045acc8bc9fe6be5 SHA1 032d7c12ca870b0ae851d57088897d0135651e5c SHA256 74d72d6909191afd70b15fec915cabff5c0dbd179fbe0dcf061380318d7646fe
 MISC metadata.xml 357 RMD160 3cd4b6e41d2a1d5ec431a90e0c59ef887f1d5706 SHA1 5a81dea20ab58342851c77d5fd7a2835053ac03b SHA256 be157b353d49731ed3ade95f20205bf367b65ff762d336042e26bca078609afa
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-Version: GnuPG v1.4.11 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
 
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diff --git a/sci-biology/bioruby/Manifest b/sci-biology/bioruby/Manifest
index 9484899c9f90..a784824a2311 100644
--- a/sci-biology/bioruby/Manifest
+++ b/sci-biology/bioruby/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA256
 
 DIST bioruby-1.1.0.tar.gz 807130 RMD160 cf0c2a8722a16eba0dfea69c209ca1401ff71d0f SHA1 9c1e2bd8411cc6cdf559e1fba68bd4531eea558f SHA256 d07a903ac633e381b356dd6429d81d318e3da86bc63b12479b57ec7ead1b22f9
 DIST bioruby-1.3.0.tar.gz 914552 RMD160 3f7b065f5c1766e480e45f344d903f33ffd9a802 SHA1 182933793cfa9bb14900a0376125f84a3505fa30 SHA256 9836d84a9791136c54b483deaaff577895891db58437ef118a9a1a5f802570f8
@@ -7,13 +7,15 @@ DIST bioruby-1.3.1.tar.gz 944866 RMD160 00c51f15e152b30d19446640e0008d09cc74e24b
 EBUILD bioruby-1.1.0.ebuild 462 RMD160 e2471709354eed2566aa5469b8b2f1c6797f74e6 SHA1 f91557883775c21b694fa47fdc82129528117f98 SHA256 4c1b40838057c75db4aa9b3cc482125334d3776d11bda674d5ed8e13e6f00e71
 EBUILD bioruby-1.3.0.ebuild 547 RMD160 179f76e16f8943eb595c780b682906b4e211d240 SHA1 4f7c8bf15c2b60b22bac848157e2a8cc3b932b48 SHA256 b4faeac366da79719535ccae248697089f6bb585c0d8a106aed239e6a4266917
 EBUILD bioruby-1.3.1.ebuild 650 RMD160 94bdd36df6e66176367744483a7931fabdfafe30 SHA1 65633d195da52748988b5bbebb1e0c27a45fe1c7 SHA256 2dfc454e80994798081cd11ab86dd0eaae93aafdbe0b21aba44166ed5a8c094e
-EBUILD bioruby-9999.ebuild 705 RMD160 27f7faef51432fbe713da0374695aa90130e201f SHA1 081da48c8ff67e137061dbc746b97e8f731b1be3 SHA256 2e42f228af7d4e2bc7222b76e5531005ffb59eff1af8f161790daa63ac47e605
-MISC ChangeLog 1794 RMD160 d4e3b1083dd56eea108e025d1d83362da65324e6 SHA1 4295eb3845262bfa790e23817cf0da093fcc24b2 SHA256 bba22bf3d1fda05f344126daca91e057dcf7c11cac4ed1b6021a772ff5100b9d
+EBUILD bioruby-9999.ebuild 747 RMD160 15681e333f7b73eda65890c76e7c324a6d887075 SHA1 f95ce1457c36603adf86901c2effaddd44dd8e71 SHA256 0b3c20115c623093e4b67cccee016948e2d7cc5a3370220fe0761df1bce56e18
+MISC ChangeLog 1886 RMD160 c6f807c6da519837dad0e73be6d3b95d5ea07566 SHA1 3bd25a68bf150b6aa4eab170ffcf685ad58f30cd SHA256 be954629b4b23a1e18a6e2343fb9aa9723397dd9bac6dc6e3c07993a77b08170
 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
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