diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/biopython/Manifest | 30 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.63.ebuild | 47 |
3 files changed, 70 insertions, 16 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index bb30a4404636..119ccab60910 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/biopython -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.73 2013/12/29 00:56:58 jlec Exp $ +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.74 2014/01/30 15:15:24 jlec Exp $ + +*biopython-1.63 (30 Jan 2014) + + 30 Jan 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63.ebuild: + Version BUmp *biopython-1.62-r1 (29 Dec 2013) diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest index 1b8b79438445..a5ac93a28e50 100644 --- a/sci-biology/biopython/Manifest +++ b/sci-biology/biopython/Manifest @@ -8,28 +8,30 @@ DIST biopython-1.58.tar.gz 8035063 SHA256 f9183facf01d3b0b489401f43a0cae8249c3dd DIST biopython-1.59.tar.gz 8577492 SHA256 588abf55de3d8e4deac611a0f810a9c5d9ce7e5868d3064f79efe6cabd18cacb SHA512 235cbe0689f9a72fe4a0713cd6c5b963b0351f7565405ef643001df14c1c5809f023f7612c5253f2487eca123f2d6fe5b66bf817d511fa82155f509edaaf5096 WHIRLPOOL 61ea1bfa2bdcb32e1eb86f37bec2e1f1eb024743e72c572b13585a6f76fe2beb97a65a6414a01408b48a9ce899d1cb63b7b71383c468cddaf047385a3bdd0036 DIST biopython-1.61.tar.gz 10557825 SHA256 61ec95432f085277da90cde811feee78ced8c7770ef6d1c58d02e6f78b5a51b0 SHA512 dfc8bb902d3a8d927e7e3526d12724d92d96a4ca459534f70d117d7e17a467c4e8decf3214d9b27f63c76ae586eefa19fd1ee0ef1f26348e851d380b127082a2 WHIRLPOOL c373eba9c4811bb17f74cc058467c9a063bc3e2c6066d1dd3c02b6b35982fda132ee2cb353f3ce2a1e569274ff4e67e7d49fc2a74f92910edccd223041522e70 DIST biopython-1.62.tar.gz 11389349 SHA256 b056414028c8cc0eea3de20d740f7a12ad0813b705de7dd454deec8f9ede52c6 SHA512 0178fd2c2e7b5e9a6cf05e8b8567bb0c1a93e9b05d5faa9802e0e2b0d59fc5e2ce9786c38cbbd00be5b35e4e4a3b41869e774a50cbbcdf6b34788c873cf0f3f2 WHIRLPOOL 63f61243581afee07cd9295989cb90b2221588e066eb1d5695da4b75fcd0abc95a9341ce07a8ffdfc3e85afdc6002582c589ac39e36e98ca4c8a257e63826351 +DIST biopython-1.63.tar.gz 11506485 SHA256 643b92debdfe7fea8771749dee24fb68733232b6e3c02ce94e568a724cc40658 SHA512 d5ef9be40ccf57c35dc7ecdc55c9bc99b0ee6af896584fc029b16e22c1eb5a5cf7d68146635f32e252130fe193998841ac39dc9d96a5511547ba70fc38f566b3 WHIRLPOOL ec9a20264266b6412d8a793ed18bbebf1633d4f6123593b542fa14d00018097b490bf9b837cb186cf30216f8db97e3063e23e565279890cef28011684a2c8536 EBUILD biopython-1.57.ebuild 1423 SHA256 9096221918c30adbd01157581f42e61286cb7d20b8ad52ad52756d8c7de155df SHA512 782410b327703e9d6d612c22daf4c977e06051995e7d7a9763690ef101d0261e0689b7787a27ae0a205d26a01df09fa6b98e2d4bc6047856b35917bb87a3a262 WHIRLPOOL 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SHA512 6ebe97c1659f71539a1dd60c9178344046085d9f3c3787f8a62d702c3026031dbafa6d49afaad2c3eb1270edfce40fd0ad749be76ce8792f7afe6b1790ae4b09 WHIRLPOOL 14430afb8e9c2bb53c175161ea2483a4825b1322934e72eb6655d8e3332652419302438050935c441a86aa5a387020e064ea57b07cfd53d90c42659ab17c0d22 EBUILD biopython-1.62-r1.ebuild 1346 SHA256 9c3b8a63c5094d6660dc53f5bd8437347dcc863d5baa8e5b945db75bac5458bd SHA512 d9c4b73ceea3e9322cdaf922e300a4da3708d531e7aaf95a0be2424182a378d629bad58794ed754dc17aed02e7e7d6586d53f86f8b7723dde36e0f9331f932f3 WHIRLPOOL 5d47aea89ac838532e0f843253a3dce100660a961a9e32c0c35a03144f229be47cab9b29ec96a3f23b1a0aaa9a5ecb5c9f3cdd2b5ee5bb0687ce7d629caae94b EBUILD biopython-1.62.ebuild 1286 SHA256 1c619ca81e8be0769789fbcabcfcbade48b5f0311ce2df423e5e6be184caff6f SHA512 8cd7d64388ee04a15ce80003c035e035cb9520f6ebfb25096caddf6848f64501f7198812f2954f6a355541985e1ea3c4602f3b9e4a7f26c33bb1133bb0654325 WHIRLPOOL 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http://pypi.python.org/pypi/biopython/" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="HPND" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="mysql postgres" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/rdflib[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/reportlab[${PYTHON_USEDEP}] + media-gfx/pydot[${PYTHON_USEDEP}] + mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) + postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + sys-devel/flex" + +DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) + +python_test() { + cd Tests || die + ${PYTHON} run_tests.py || die +} + +python_install_all() { + distutils-r1_python_install_all + + dodir /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die +} |