diff options
Diffstat (limited to 'sci-mathematics')
| -rw-r--r-- | sci-mathematics/rstudio/ChangeLog | 24 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/Manifest | 34 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/files/rsession.conf | 26 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/files/rstudio-0.98.1091-pandoc.patch | 26 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/files/rstudio-server.conf | 35 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/files/rstudio-server.initd (renamed from sci-mathematics/rstudio/files/rstudio-rserver.initd) | 2 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.97.318.ebuild | 134 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.97.336.ebuild | 14 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.97.551.ebuild | 14 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.98.1028.ebuild | 12 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.98.1091.ebuild | 195 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild | 10 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.98.490.ebuild | 12 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.98.932.ebuild | 12 | ||||
| -rw-r--r-- | sci-mathematics/rstudio/rstudio-0.98.953.ebuild | 12 |
15 files changed, 391 insertions, 171 deletions
diff --git a/sci-mathematics/rstudio/ChangeLog b/sci-mathematics/rstudio/ChangeLog index e1d519c340dc..9a7872ac23a3 100644 --- a/sci-mathematics/rstudio/ChangeLog +++ b/sci-mathematics/rstudio/ChangeLog @@ -1,6 +1,28 @@ # ChangeLog for sci-mathematics/rstudio # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/ChangeLog,v 1.17 2014/11/29 11:31:36 gienah Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/ChangeLog,v 1.18 2014/12/06 12:32:01 gienah Exp $ + +*rstudio-0.98.1091 (06 Dec 2014) + + 06 Dec 2014; Mark Wright <gienah@gentoo.org> +files/rsession.conf, + +files/rstudio-0.98.1091-pandoc.patch, +files/rstudio-server.conf, + +files/rstudio-server.initd, +rstudio-0.98.1091.ebuild, + -files/rstudio-rserver.initd, -rstudio-0.97.318.ebuild, + rstudio-0.97.336.ebuild, rstudio-0.97.551.ebuild, rstudio-0.98.1028.ebuild, + rstudio-0.98.490-r1.ebuild, rstudio-0.98.490.ebuild, rstudio-0.98.932.ebuild, + rstudio-0.98.953.ebuild: + Bump rstudio to 0.98.1091. Fix Bug 519290 sci-mathematics/rstudio-0.98.490 - + rstudio-server start: /usr/bin/rstudio-server: 1: eval: /etc/init.d/rstudio- + server: not found, thanks to Franz Fellner for reporting, Adam Tygart and + Franz Fellner for suggesting the fix, Silvio for testing. Fix Bug 522196 - + sci-mathematics/rstudio lack of server part and two more conf files, thanks to + Silvio for reporting and providing the conf files. Fix Bug 523296 - sci- + mathematics/rstudio-0.98-1028 with dev-libs/boost-1.56.0 - + .../work/rstudio-0.98.1028/src/cpp/core/Assert.cpp:40:10: error: + boost::core::log has not been declared. paxmark m rstudio for Gentoo Hardened. + Add missing dependencies app-text/pandoc and dev-haskell/pandoc-citeproc to + rstudio-0.98.1028.ebuild. Remove obsolete rstudio-0.97.318.ebuild, as the this + failed to build in my tests. 29 Nov 2014; Mark Wright <gienah@gentoo.org> metadata.xml: Set the maintainer. diff --git a/sci-mathematics/rstudio/Manifest b/sci-mathematics/rstudio/Manifest index 77149bbe6f29..bffc3f4be071 100644 --- a/sci-mathematics/rstudio/Manifest +++ b/sci-mathematics/rstudio/Manifest @@ -1,6 +1,7 @@ -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 +AUX rsession.conf 1145 SHA256 23dea938def95eaf559666faba1701f686000d1af510a579d13e415d99b8226e SHA512 90395faac5aa80ce52ae56da3565512b8a880a14ab2acf9a24c7a56c9d03f1e3d5f63ebaca66efa68f5c5c9c831235846df22ca37f20ba071437a2a963b808cf WHIRLPOOL c57d10c1fdccb49004825f4f99e8fb966e4270167be36116a5b73c289bb4af89fb36a99275d1b35d0f2f4b6f3dfc2fa45a9e66892ea9d59a8223afa888990db6 AUX rstudio-0.97.318-linker_flags.patch 806 SHA256 9fa104ef1fc659aeda8108d2a6418679685ae8d0a19e3f5f97a634ad1d1d05d8 SHA512 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their session +# will be restored). You can change the timeout (including +# disabling it by specifying a value of 0) using the +# session-timeout-minutes setting +#session-timeout-minutes=30 + +# By default RStudio sets the R_LIBS_USER environment +# variable to ~/R/library. This ensures that packages +# installed by end users do not have R version numbers +# encoded in the path (which is the default behavior). +# This in turn enables administrators to upgrade the version +# of R on the server without reseting users installed packages +# (which would occur if the installed packages were in an +# R-version derived directory). +# If you wish to override this behavior you can do so using +# the r-libs-user settings +#r-libs-user=~/R/packages + +# You can set the default CRAN repository for the server +# using the r-cran-repos setting +#r-cran-repos=http://cran.case.edu/ diff --git a/sci-mathematics/rstudio/files/rstudio-0.98.1091-pandoc.patch b/sci-mathematics/rstudio/files/rstudio-0.98.1091-pandoc.patch new file mode 100644 index 000000000000..3df8d1a986a3 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-0.98.1091-pandoc.patch @@ -0,0 +1,26 @@ +--- rstudio-0.98.1091-orig/src/cpp/session/CMakeLists.txt 2014-11-06 23:15:47.000000000 +1100 ++++ rstudio-0.98.1091/src/cpp/session/CMakeLists.txt 2014-11-26 17:12:42.699712510 +1100 +@@ -25,9 +25,6 @@ + if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-23") + message(FATAL_ERROR "Mathjax 2.3 not found (re-run install-dependencies script to install)") + endif() +-if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc") +- message(FATAL_ERROR "pandoc not found (re-run install-dependencies script to install)") +-endif() + if(NOT EXISTS "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown") + message(FATAL_ERROR "rmarkdown package not found (re-run install-dependencies script to install)") + endif() +@@ -343,13 +340,6 @@ + install(DIRECTORY "${RSTUDIO_DEPENDENCIES_DIR}/common/mathjax-23" + DESTINATION "${RSTUDIO_INSTALL_SUPPORTING}/resources") + +- # install pandoc +- set(PANDOC_BIN "${RSTUDIO_DEPENDENCIES_DIR}/common/pandoc/1.12.4.2") +- file(GLOB PANDOC_FILES "${PANDOC_BIN}/pandoc*") +- install(FILES ${PANDOC_FILES} +- PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE +- DESTINATION ${RSTUDIO_INSTALL_BIN}/pandoc) +- + # install rmarkdown package + file(GLOB RMARKDOWN_PACKAGE "${RSTUDIO_DEPENDENCIES_DIR}/common/rmarkdown*.tar.gz") + install(FILES ${RMARKDOWN_PACKAGE} diff --git a/sci-mathematics/rstudio/files/rstudio-server.conf b/sci-mathematics/rstudio/files/rstudio-server.conf new file mode 100644 index 000000000000..ebf1a1649169 --- /dev/null +++ b/sci-mathematics/rstudio/files/rstudio-server.conf @@ -0,0 +1,35 @@ +###########rstudio-server.conf############# + +# www-port entry corresponding to the port you want RStudio to listen on +#www-port=80 + + +# By default RStudio binds to address 0.0.0.0 (accepting connections +# from any remote IP). You can modify this behavior using the +# www-address entry. +#www-address=127.0.0.1 + + +# You can add elements to the default LD_LIBRARY_PATH for R +# sessions (as determined by the R ldpaths script) by adding +# an rsession-ld-library-path entry to the server config file. +# This might be useful for ensuring that packages can +# locate external library dependencies that aren't installed +# in the system standard library paths +#rsession-ld-library-path=/opt/local/lib:/opt/local/someapp/lib + + +#By default RStudio Server runs against the version of R which +# is found on the system PATH (using which R). You can override +# which version of R is used via the rsession-which-r setting +# in the server config file. For example, if you have two +# versions of R installed on the server and want to make sure +# the one at /usr/local/bin/R is used by RStudio then you would use: +rsession-which-r=/usr/bin/R + +########ADDITIONALAL######### + +# To limit the users who can login to RStudio to the members +# of a specific group, you use the auth-required-user-group +# setting +auth-required-user-group=rstudio_users diff --git a/sci-mathematics/rstudio/files/rstudio-rserver.initd b/sci-mathematics/rstudio/files/rstudio-server.initd index 37a684cdd76f..e6ca6b942bb9 100644 --- a/sci-mathematics/rstudio/files/rstudio-rserver.initd +++ b/sci-mathematics/rstudio/files/rstudio-server.initd @@ -1,5 +1,5 @@ #!/sbin/runscript -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 start() { diff --git a/sci-mathematics/rstudio/rstudio-0.97.318.ebuild b/sci-mathematics/rstudio/rstudio-0.97.318.ebuild deleted file mode 100644 index 6030fb1a8dc0..000000000000 --- a/sci-mathematics/rstudio/rstudio-0.97.318.ebuild +++ /dev/null @@ -1,134 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.97.318.ebuild,v 1.2 2013/03/02 23:25:58 hwoarang Exp $ - -EAPI=5 - -inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 - -# TODO -# * package gin and gwt -# * use dict from tree, linguas -# * do src_test (use junit from tree?) -# * fix the about/help/menu and get rid of license - -GWTVER=2.5.0.rc1 -GINVER=1.5 - -DESCRIPTION="IDE for the R language" -HOMEPAGE="http://www.rstudio.org" -SRC_URI="https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://s3.amazonaws.com/rstudio-buildtools/gin-${GINVER}.zip - https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWTVER}.zip - https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip" - -LICENSE="AGPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="dedicated server" - -QTVER=4.8 -QTSLOT=4 -RDEPEND=">=dev-lang/R-2.11.1 - >=dev-libs/boost-1.50 - dev-libs/mathjax - dev-libs/openssl - >=virtual/jre-1.5 - x11-libs/pango - !dedicated? ( - >=dev-qt/qtcore-${QTVER}:${QTSLOT} - >=dev-qt/qtdbus-${QTVER}:${QTSLOT} - >=dev-qt/qtgui-${QTVER}:${QTSLOT} - >=dev-qt/qtwebkit-${QTVER}:${QTSLOT} - >=dev-qt/qtxmlpatterns-${QTVER}:${QTSLOT} - server? ( virtual/pam ) - ) - dedicated? ( virtual/pam )" -DEPEND="${RDEPEND} - app-arch/unzip - dev-java/ant-core - >=virtual/jdk-1.5 - virtual/pkgconfig" -# test? ( dev-java/junit:4 ) - -src_unpack() { - unpack ${P}.tar.gz gwt-${GWTVER}.zip - cd "${S}" || die - mkdir -p src/gwt/lib/{gin,gwt} dependencies/common/dictionaries || die - mv ../gwt-${GWTVER} src/gwt/lib/gwt/${GWTVER} || die - unzip -qd src/gwt/lib/gin/${GINVER} "${DISTDIR}"/gin-${GINVER}.zip || die - unzip -qd dependencies/common/dictionaries "${DISTDIR}"/core-dictionaries.zip || die -} - -src_prepare() { - java-pkg-2_src_prepare - - find . -name .gitignore -delete || die - - epatch "${FILESDIR}"/${P}-prefs.patch \ - "${FILESDIR}"/${P}-paths.patch \ - "${FILESDIR}"/${P}-linker_flags.patch - - # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using - # this sed hack for now. ~RMH - sed -i \ - -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \ - src/cpp/server/ServerOptions.cpp \ - src/cpp/session/SessionOptions.cpp || die - - # use mathjax from system - ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax || die - - # make sure icons and mime stuff are with prefix - sed -i \ - -e "s:/usr:${EPREFIX}/usr:g" \ - CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die -} - -src_configure() { - export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1) - export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2) - export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3) - - local mycmakeargs=( - -DDISTRO_SHARE=share/${PN} - $(cmake-utils_use !dedicated RSTUDIO_INSTALL_FREEDESKTOP) - -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "All" "Desktop")") - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -} - -src_install() { - cmake-utils_src_install - if use dedicated || use server; then - dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver - fi -} - -pkg_preinst() { - use dedicated || gnome2_icon_savelist - java-pkg-2_pkg_preinst -} - -pkg_postinst() { - use dedicated || { fdo-mime_desktop_database_update - fdo-mime_mime_database_update - gnome2_icon_cache_update ;} - - if use dedicated || use server; then - enewgroup rstudio-server - enewuser rstudio-server -1 -1 -1 rstudio-server - fi -} - -pkg_postrm() { - use dedicated || { fdo-mime_desktop_database_update - fdo-mime_mime_database_update - gnome2_icon_cache_update ;} -} diff --git a/sci-mathematics/rstudio/rstudio-0.97.336.ebuild b/sci-mathematics/rstudio/rstudio-0.97.336.ebuild index 1e9f90a5153a..b49cb580cf9b 100644 --- a/sci-mathematics/rstudio/rstudio-0.97.336.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.97.336.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.97.336.ebuild,v 1.2 2013/07/15 15:21:58 hasufell Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.97.336.ebuild,v 1.3 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 +inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -84,6 +84,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -106,9 +111,10 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" if use dedicated || use server; then dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server fi } diff --git a/sci-mathematics/rstudio/rstudio-0.97.551.ebuild b/sci-mathematics/rstudio/rstudio-0.97.551.ebuild index 6de5d19c5753..79d871e7889d 100644 --- a/sci-mathematics/rstudio/rstudio-0.97.551.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.97.551.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.97.551.ebuild,v 1.1 2013/07/16 11:39:28 hasufell Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.97.551.ebuild,v 1.2 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 +inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -84,6 +84,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -106,9 +111,10 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" if use dedicated || use server; then dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server fi } diff --git a/sci-mathematics/rstudio/rstudio-0.98.1028.ebuild b/sci-mathematics/rstudio/rstudio-0.98.1028.ebuild index 086d714b60b5..f21ff18c4864 100644 --- a/sci-mathematics/rstudio/rstudio-0.98.1028.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.98.1028.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.1028.ebuild,v 1.1 2014/08/27 15:51:02 hasufell Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.1028.ebuild,v 1.2 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils cmake-utils gnome2-utils versionator fdo-mime java-pkg-2 +inherit eutils cmake-utils gnome2-utils versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -41,6 +41,8 @@ IUSE="" QTVER=4.8 QTSLOT=4 RDEPEND=" + app-text/pandoc + dev-haskell/pandoc-citeproc >=dev-lang/R-2.11.1 >=dev-libs/boost-1.50 dev-libs/mathjax @@ -112,6 +114,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -134,6 +141,7 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" } pkg_preinst() { diff --git a/sci-mathematics/rstudio/rstudio-0.98.1091.ebuild b/sci-mathematics/rstudio/rstudio-0.98.1091.ebuild new file mode 100644 index 000000000000..a59098b1adbc --- /dev/null +++ b/sci-mathematics/rstudio/rstudio-0.98.1091.ebuild @@ -0,0 +1,195 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.1091.ebuild,v 1.1 2014/12/06 12:32:01 gienah Exp $ + +EAPI=5 + +inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils + +# TODO +# * package gin and gwt +# * use dict from tree, linguas +# * do src_test (use junit from tree?) + +# update from scripts in dependencies/common +GWTVER=2.6.0 +GINVER=1.5 +SELENIUMVER=2.37.0 +CHROMEDRIVER_VER=2.7 +PANDOC_VER=1.12.4.2 +PACKRAT_VER=0.98.1000 +RMARKDOWN_VER=0.98.1000 +SHINYAPPS_VER=0.98.1000 + +DESCRIPTION="IDE for the R language" +HOMEPAGE="http://www.rstudio.org + https://github.com/rstudio/rstudio/" +SRC_URI="https://github.com/rstudio/rstudio/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://s3.amazonaws.com/rstudio-buildtools/gin-${GINVER}.zip + https://s3.amazonaws.com/rstudio-buildtools/gwt-${GWTVER}.zip + https://s3.amazonaws.com/rstudio-buildtools/selenium-java-${SELENIUMVER}.zip + https://s3.amazonaws.com/rstudio-buildtools/selenium-server-standalone-${SELENIUMVER}.jar + https://s3.amazonaws.com/rstudio-buildtools/chromedriver-linux + https://s3.amazonaws.com/rstudio-dictionaries/core-dictionaries.zip + http://dev.gentoo.org/~gienah/distfiles/packrat-${PACKRAT_VER}.tar.gz + http://dev.gentoo.org/~gienah/distfiles/rmarkdown-${RMARKDOWN_VER}.tar.gz + http://dev.gentoo.org/~gienah/distfiles/shinyapps-${SHINYAPPS_VER}.tar.gz" + +LICENSE="AGPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="dedicated server" + +QTVER=4.8 +QTSLOT=4 +RDEPEND=" + app-text/pandoc + dev-haskell/pandoc-citeproc + >=dev-lang/R-2.11.1 + >=dev-libs/boost-1.50:= + >=dev-libs/mathjax-2.3 + dev-libs/openssl:0 + sys-apps/util-linux + sys-libs/zlib + >=virtual/jre-1.5 + x11-libs/pango + !dedicated? ( + >=dev-qt/qtcore-${QTVER}:${QTSLOT} + >=dev-qt/qtdbus-${QTVER}:${QTSLOT} + >=dev-qt/qtgui-${QTVER}:${QTSLOT} + >=dev-qt/qtwebkit-${QTVER}:${QTSLOT} + >=dev-qt/qtxmlpatterns-${QTVER}:${QTSLOT} + server? ( virtual/pam ) + ) + dedicated? ( virtual/pam )" +DEPEND="${RDEPEND} + app-arch/unzip + dev-java/ant-core + >=virtual/jdk-1.5 + virtual/pkgconfig" +# test? ( dev-java/junit:4 ) + +src_unpack() { + unpack ${P}.tar.gz gwt-${GWTVER}.zip + cd "${S}" || die + mkdir -p src/gwt/lib/{gin,gwt} \ + dependencies/common/dictionaries \ + src/gwt/lib/selenium/${SELENIUMVER} \ + src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER} || die + mv ../gwt-${GWTVER} src/gwt/lib/gwt/${GWTVER} || die + unzip -qd src/gwt/lib/gin/${GINVER} \ + "${DISTDIR}"/gin-${GINVER}.zip || die + unzip -qd dependencies/common/dictionaries \ + "${DISTDIR}"/core-dictionaries.zip || die + unzip -qd src/gwt/lib/selenium/${SELENIUMVER} \ + "${DISTDIR}"/selenium-java-${SELENIUMVER}.zip || die + cp "${DISTDIR}"/selenium-server-standalone-${SELENIUMVER}.jar \ + src/gwt/lib/selenium/${SELENIUMVER}/ || die + cp "${DISTDIR}"/chromedriver-linux \ + src/gwt/lib/selenium/chromedriver/${CHROMEDRIVER_VER}/ || die + cd dependencies/common || die + unpack packrat-${PACKRAT_VER}.tar.gz + unpack rmarkdown-${RMARKDOWN_VER}.tar.gz + unpack shinyapps-${RMARKDOWN_VER}.tar.gz + cp "${DISTDIR}"/rmarkdown-${RMARKDOWN_VER}.tar.gz \ + . || die + cp "${DISTDIR}"/packrat-${PACKRAT_VER}.tar.gz \ + . || die + cp "${DISTDIR}"/shinyapps-${SHINYAPPS_VER}.tar.gz \ + . || die +} + +src_prepare() { + java-pkg-2_src_prepare + + find . -name .gitignore -delete || die + + epatch "${FILESDIR}"/${PN}-0.98.490-prefs.patch \ + "${FILESDIR}"/${PN}-0.98.932-paths.patch \ + "${FILESDIR}"/${PN}-0.98.1091-pandoc.patch \ + "${FILESDIR}"/${PN}-0.98.490-linker_flags.patch + + # Adding -DDISTRO_SHARE=... to append-flags breaks cmake so using + # this sed hack for now. ~RMH + sed -i \ + -e "s|DISTRO_SHARE|\"share/${PN}\"|g" \ + src/cpp/server/ServerOptions.cpp \ + src/cpp/session/SessionOptions.cpp || die + + # use mathjax from system + ln -sf "${EPREFIX}"/usr/share/mathjax dependencies/common/mathjax-23 || die + + # make sure icons and mime stuff are with prefix + sed -i \ + -e "s:/usr:${EPREFIX}/usr:g" \ + CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; + + # On Gentoo the rstudio-server configuration file is /etc/conf.d/rstudio-server.conf + sed -e "s@/etc/rstudio/rserver.conf@${EROOT}etc/conf.d/rstudio-server.conf@" \ + -i src/cpp/server/ServerOptions.cpp \ + || die + + # Set the rsession.conf file location for Gentoo prefix + sed -e "s@/etc/rstudio/rsession.conf@${EROOT}etc/rstudio/rsession.conf@" \ + -i src/cpp/session/SessionOptions.cpp \ + || die +} + +src_configure() { + export RSTUDIO_VERSION_MAJOR=$(get_version_component_range 1) + export RSTUDIO_VERSION_MINOR=$(get_version_component_range 2) + export RSTUDIO_VERSION_PATCH=$(get_version_component_range 3) + + local mycmakeargs=( + -DDISTRO_SHARE=share/${PN} + $(cmake-utils_use !dedicated RSTUDIO_INSTALL_FREEDESKTOP) + -DRSTUDIO_TARGET=$(usex dedicated "Server" "$(usex server "Development" "Desktop")") + ) + + cmake-utils_src_configure +} + +src_compile() { + cmake-utils_src_compile +} + +src_install() { + cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" + doconfd "${FILESDIR}"/rstudio-server.conf + dodir /etc/rstudio + insinto /etc/rstudio + doins "${FILESDIR}"/rsession.conf + dosym /etc/conf.d/rstudio-server.conf /etc/rstudio/rserver.conf + if use dedicated || use server; then + dopamd src/cpp/server/extras/pam/rstudio + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server + fi +} + +pkg_preinst() { + use dedicated || gnome2_icon_savelist + java-pkg-2_pkg_preinst +} + +pkg_postinst() { + use dedicated || { fdo-mime_desktop_database_update + fdo-mime_mime_database_update + gnome2_icon_cache_update ;} + + if use dedicated || use server; then + enewgroup rstudio-server + enewuser rstudio-server -1 -1 -1 rstudio-server + fi +} + +pkg_postrm() { + use dedicated || { fdo-mime_desktop_database_update + fdo-mime_mime_database_update + gnome2_icon_cache_update ;} +} diff --git a/sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild b/sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild index 4de7ad2e3e68..f2624bad47e1 100644 --- a/sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild,v 1.2 2014/08/30 15:46:38 nimiux Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.490-r1.ebuild,v 1.3 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils cmake-utils gnome2-utils versionator fdo-mime java-pkg-2 +inherit eutils cmake-utils gnome2-utils versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -79,6 +79,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -101,6 +106,7 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" } pkg_preinst() { diff --git a/sci-mathematics/rstudio/rstudio-0.98.490.ebuild b/sci-mathematics/rstudio/rstudio-0.98.490.ebuild index 8247d4c7d32f..43ef5c39a7e9 100644 --- a/sci-mathematics/rstudio/rstudio-0.98.490.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.98.490.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.490.ebuild,v 1.3 2014/07/27 11:33:09 phajdan.jr Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.490.ebuild,v 1.4 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 +inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -83,6 +83,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -105,9 +110,10 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" if use dedicated || use server; then dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server fi } diff --git a/sci-mathematics/rstudio/rstudio-0.98.932.ebuild b/sci-mathematics/rstudio/rstudio-0.98.932.ebuild index 54c8065a81a0..5ab66202c31f 100644 --- a/sci-mathematics/rstudio/rstudio-0.98.932.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.98.932.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.932.ebuild,v 1.1 2014/07/04 13:53:22 hasufell Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.932.ebuild,v 1.2 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 +inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -115,6 +115,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -137,9 +142,10 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" if use dedicated || use server; then dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server fi } diff --git a/sci-mathematics/rstudio/rstudio-0.98.953.ebuild b/sci-mathematics/rstudio/rstudio-0.98.953.ebuild index 9a3b3d5a7d51..8e87354cb264 100644 --- a/sci-mathematics/rstudio/rstudio-0.98.953.ebuild +++ b/sci-mathematics/rstudio/rstudio-0.98.953.ebuild @@ -1,10 +1,10 @@ # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.953.ebuild,v 1.1 2014/07/04 14:08:16 hasufell Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/rstudio/rstudio-0.98.953.ebuild,v 1.2 2014/12/06 12:32:01 gienah Exp $ EAPI=5 -inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 +inherit eutils user cmake-utils gnome2-utils pam versionator fdo-mime java-pkg-2 pax-utils # TODO # * package gin and gwt @@ -116,6 +116,11 @@ src_prepare() { sed -i \ -e "s:/usr:${EPREFIX}/usr:g" \ CMakeGlobals.txt src/cpp/desktop/CMakeLists.txt || die + + # specify that namespace core the is in the global namespace and not + # relative to some other namespace (like its ::core not ::boost::core) + find . \( -name *.cpp -or -name *.hpp \) -exec sed \ + -e 's@<core::@< ::core::@g' -e 's@\([^:]\)core::@\1::core::@g' -i {} \; } src_configure() { @@ -138,9 +143,10 @@ src_compile() { src_install() { cmake-utils_src_install + pax-mark m "${ED}usr/bin/rstudio" if use dedicated || use server; then dopamd src/cpp/server/extras/pam/rstudio - newinitd "${FILESDIR}"/rstudio-rserver.initd rstudio-rserver + newinitd "${FILESDIR}"/rstudio-server.initd rstudio-server fi } |