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* Drop old; BUmp EAPI; handle static-libsJustin Lecher2015-03-215-69/+39
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Drop old; fix for format-security; drop broken doc generation, bug #461000Justin Lecher2015-03-206-78/+59
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Fix tcl/tk slotting;drop old; Bump EAPIJustin Lecher2015-03-205-94/+72
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Drop oldJustin Lecher2015-03-154-106/+23
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Add missing X deps, #542558Justin Lecher2015-03-113-19/+30
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for amd64, wrt bug #542246Agostino Sarubbo2015-03-093-22/+23
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Fix broken doc installations, #542348Justin Lecher2015-03-073-20/+22
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* EAPI BumpJustin Lecher2015-03-054-24/+34
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Bump to EAPI=5 and host tarball instead of just mirror itJustin Lecher2015-03-054-18/+86
| | | | | Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Drop oldJustin Lecher2015-03-0310-383/+26
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Version Bump; add py3 and pypy supportJustin Lecher2015-03-033-18/+76
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Bump EAPIJustin Lecher2015-03-034-15/+74
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Drop oldJustin Lecher2015-03-035-125/+20
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Version BUmp; thanks Ted TanberryJustin Lecher2015-03-034-9/+90
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Fix format-security and SLOT operatorsJustin Lecher2015-03-025-12/+238
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Fix dependencies, #425710; make buildsystem sane; fix format-securityJustin Lecher2015-03-026-16/+148
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for ppc, wrt bug #541512Agostino Sarubbo2015-03-023-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for ppc, wrt bug #525378Agostino Sarubbo2015-03-023-21/+23
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #541512Agostino Sarubbo2015-02-283-22/+23
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Fix depend rules in make which break due to unbundling of htslib, #541134; ↵Justin Lecher2015-02-284-23/+69
| | | | | | | use LD_LIBRARY_PATH druing tests Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Version BumpJustin Lecher2015-02-273-16/+69
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* Version Bump, #540692Justin Lecher2015-02-244-16/+91
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Prefix love, #540690; thanks Michael Schubert for the patchJustin Lecher2015-02-193-27/+29
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Version Bump, #540356Justin Lecher2015-02-184-16/+260
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* Drop missing patchJustin Lecher2015-02-173-19/+21
| | | | | Package-Manager: portage-2.2.17/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Keyword ~ppc64, bug #452010.Anthony G. Basile2015-02-095-19/+33
| | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 Manifest-Sign-Key: 0xF52D4BBA
* sci-biology/rebase: Version BumpJustin Lecher2015-02-023-16/+69
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Switch to CPU_FLAGS_X86.Michał Górny2015-01-2913-74/+118
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xEFB4464E!
* Convert to CPU_FLAGS_X86.Michał Górny2015-01-294-18/+34
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xEFB4464E!
* sci-biology/rebase: Drop oldJustin Lecher2015-01-263-65/+22
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* Stable for x86, wrt bug #534598Agostino Sarubbo2015-01-263-18/+21
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* sci-biology/mira: Build fix for newer gcc, #537564Justin Lecher2015-01-254-19/+41
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* sci-biology/mira: Version BUmp, thanks Martin Mokrejš for the workJustin Lecher2015-01-233-16/+99
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* sci-biology/mira: Add workaroung for m4 dir location, #536172Justin Lecher2015-01-233-20/+26
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* Port to ghc-7.8 (bug #537052 by Toralf Förster).Sergei Trofimovich2015-01-195-43/+52
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* Stable for ppc, wrt bug #534598Agostino Sarubbo2015-01-173-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #534598Agostino Sarubbo2015-01-093-23/+24
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* sci-biology/trnascan-se: Version BUmp, #532460Justin Lecher2015-01-086-59/+122
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* sci-biology/cufflinks: Add upper limit for boost dep as forced by upstream, ↵Justin Lecher2015-01-085-27/+34
| | | | | | | #535716 Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* sci-biology/samtools: Version BUmpJustin Lecher2015-01-064-17/+262
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* sci-biology/rebase: Version BUmp; Drop oldJustin Lecher2015-01-047-214/+31
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for ppc, wrt bug #531422Agostino Sarubbo2014-12-313-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Stable for ppc, wrt bug #527402Agostino Sarubbo2014-12-313-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="ppc" Manifest-Sign-Key: 0x7194459F
* Rename virtual/postgresql to dev-db/postgresqlAaron Swenson2014-12-284-11/+15
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* Stable for x86, wrt bug #531422Agostino Sarubbo2014-12-283-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* Stable for amd64, wrt bug #531422Agostino Sarubbo2014-12-273-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="amd64" Manifest-Sign-Key: 0x7194459F
* Stable for x86, wrt bug #527402Agostino Sarubbo2014-12-263-18/+21
| | | | | | Package-Manager: portage-2.2.14/cvs/Linux x86_64 RepoMan-Options: --include-arches="x86" Manifest-Sign-Key: 0x7194459F
* sci-biology/seqan: Test for SSE4.1 support, #531876Justin Lecher2014-12-263-18/+29
| | | | | Package-Manager: portage-2.2.15/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
* Stable for amd64 wrt bug #527402José María Alonso2014-12-223-22/+23
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* Drop perl herd from metadataAndreas Hüttel2014-12-193-18/+20
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