# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.3 2005/05/21 23:31:50 weeve Exp $

inherit eutils toolchain-funcs

DESCRIPTION="Intelligent algorithms for DNA searches"
LICENSE="BSD"
HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"

SLOT="0"
IUSE=""
KEYWORDS="~sparc x86"

RDEPEND="=sci-biology/hmmer-2.3.2-r1"

DEPEND="${RDEPEND}
	app-shells/tcsh
	dev-lang/perl
	virtual/tetex"

S=${WORKDIR}/${PN}${PV}

src_unpack() {
	unpack ${A}
	cd ${S}/src
#	if use threads; then
#		append-flags "-DPTHREAD"
#		sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/" -i makefile || die
#	fi
	sed -e "s/CC = cc/CC = $(tc-getCC)/" \
		-e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
		-i makefile || die
	cd ${S}/docs
	cat ${S}/src/models/*.tex ${S}/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
	cat wise2api.tex temp.tex apiend.tex > api.tex
	epatch ${FILESDIR}/${PN}-api.tex.patch
}

src_compile() {
	cd src
	make all || die
	cd ${S}/docs
	for i in api appendix dynamite wise2 wise3arch; do
		latex ${i} || die
		latex ${i} || die
		dvips ${i}.dvi -o || die
	done
}

src_install() {
	dobin ${S}/src/bin/*
	dolib ${S}/src/base/libwisebase.a
	dolib ${S}/src/dynlibsrc/libdyna.a
	dobin ${S}/src/dynlibsrc/testgendb
	dolib ${S}/src/models/libmodel.a
	insinto /usr/share/${PN}
	doins -r ${S}/wisecfg
	insinto /usr/share/doc/${PF}
	doins ${S}/docs/*.ps
	newenvd ${FILESDIR}/${PN}-env 24wise
}

src_test() {
	cd ${S}/src
	WISECONFIGDIR="${S}/wisecfg" make test || die
}