diff options
author | 2022-05-25 19:05:35 -0500 | |
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committer | 2022-05-25 20:26:54 -0500 | |
commit | e0a89fd9e8bf7f3939ffc6eefaf7ce059a3ab13a (patch) | |
tree | 93d86334afceb295a02d23b34b08cbb816d9efa0 /sci-mathematics/petsc | |
parent | sci-mathematics/slepc: add 3.17.1 (diff) | |
download | gentoo-e0a89fd9e8bf7f3939ffc6eefaf7ce059a3ab13a.tar.gz gentoo-e0a89fd9e8bf7f3939ffc6eefaf7ce059a3ab13a.tar.bz2 gentoo-e0a89fd9e8bf7f3939ffc6eefaf7ce059a3ab13a.zip |
sci-mathematics/petsc: drop 3.13.1, 3.14.6, 3.15.0, 3.15.0-r1
Signed-off-by: Matthias Maier <tamiko@gentoo.org>
Diffstat (limited to 'sci-mathematics/petsc')
-rw-r--r-- | sci-mathematics/petsc/Manifest | 3 | ||||
-rw-r--r-- | sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch | 34 | ||||
-rw-r--r-- | sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch | 18 | ||||
-rw-r--r-- | sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch | 90 | ||||
-rw-r--r-- | sci-mathematics/petsc/petsc-3.13.1.ebuild | 196 | ||||
-rw-r--r-- | sci-mathematics/petsc/petsc-3.14.6.ebuild | 194 | ||||
-rw-r--r-- | sci-mathematics/petsc/petsc-3.15.0-r1.ebuild | 194 | ||||
-rw-r--r-- | sci-mathematics/petsc/petsc-3.15.0.ebuild | 190 |
8 files changed, 0 insertions, 919 deletions
diff --git a/sci-mathematics/petsc/Manifest b/sci-mathematics/petsc/Manifest index a53a6158e9b6..8a1dcafa8362 100644 --- a/sci-mathematics/petsc/Manifest +++ b/sci-mathematics/petsc/Manifest @@ -1,6 +1,3 @@ -DIST petsc-3.13.1.tar.gz 35097687 BLAKE2B fccf64fd3694deffdd0dc561069ffa7e9342fe279b5c9123edeb011df931874083839d27b7b9a0c63faea6487b104b54fd4ce68a88a074c82de91e8baaf270b0 SHA512 41c3138a6ae6c1f2d9077b464c6aeda96287e5a76849582b8f432e2ee93d2594a78ba2181eac0054a77b6165692be5f1a057049313f2be9743d4246383dfdc77 -DIST petsc-3.14.6.tar.gz 39719179 BLAKE2B d3047baf87c67eb64ef02c0c54d6313ea06f091b377b3cdf6dcf6d96c7d68cec5958a007ddd84b52a3ab39bfc0adf146307fa1785a10f39386393371186a3fba SHA512 9766e164446ac5a69b8bf761a0e8a235b1a2b85ed9c96a7fd59e668ae4cceb9d9559a38b175b4aa9747e78d7b44d0018a3c02748dcd3d783d28f861f8382d44c -DIST petsc-3.15.0.tar.gz 15976488 BLAKE2B babfbeb05321c9cb2f7d70ef8ffca974a016eae73ca1a3359d9a8d38aa5aa90ff34571169a5711627d738b93f89fdee3d0a0ff1bd0e51cb7300bbb9b0a8675cb SHA512 d1565823d8a5ce5e1c2c576bbe1b4ebf467cef20bbd8e0cf6c303c6c2af2bf902b66c79468f4e125496f9242be4bd6ac162535ee30252cfb902c0d906a6f27c0 DIST petsc-3.16.0-fftw-without-mpi.patch.bz2 5824 BLAKE2B 59615b1bbaf8ca1da92d7d193a45a2dd434f762cd741d711d4f408183a201a276ac3c968a3e7d740d19212120271701bce52bb7b0f4e311268f40915c81f9dcb SHA512 8e07dfe56a9150ce9a3a5ab8012657875ef84e6e7daa60560bbdd9062078c876a826057f3f3eaf1697ce046a82756ee6eb6a8b819eb51245367c9d5c8a72ee8e DIST petsc-3.16.0.tar.gz 16748960 BLAKE2B 87f9fdb79a9c44e5f476fa4746ad0cbe72f3eda9f6039f2e4743105626701d7c8d6c010fdb9d89becf8619288d0b7a60c8bc4e2fc0793eac5b39030b02c04fd9 SHA512 5280032fb4ec4d058733788bb0ae674e7400565e204133bd10ed88a2965230ec7adeaca2d498267ce661377ca7e6f9d948992206b1d679587606cb422c004655 DIST petsc-3.17.1.tar.gz 17082265 BLAKE2B de1bfe45f93e18e32181499e59912df9225c8e24d75f52e641e552fd43e4d5be48d549d284365b173aa93e51603f5b7740eaac0557ff8c7c96b370f4683257f6 SHA512 8c81cc148b1a899a55e54a013d61519ec7b44f98f7ae30c3f8d0e83ba285b23f4b4d9e2cd483c531d337bc41887e4079b727ba73676b1b653910140291e93575 diff --git a/sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch b/sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch deleted file mode 100644 index 4c46658dec71..000000000000 --- a/sci-mathematics/petsc/files/petsc-3.13.0-do_not_run_mpiexec.patch +++ /dev/null @@ -1,34 +0,0 @@ -diff --git a/config/BuildSystem/config/packages/MPI.py b/config/BuildSystem/config/packages/MPI.py -index 7e424e71..ee502bd2 100644 ---- a/config/BuildSystem/config/packages/MPI.py -+++ b/config/BuildSystem/config/packages/MPI.py -@@ -210,28 +210,11 @@ shared libraries and run with --known-mpi-shared-libraries=1') - raise RuntimeError('Could not locate MPIEXEC - please specify --with-mpiexec option') - # Support for spaces and () in executable names; also needs to handle optional arguments at the end - # TODO: This support for spaces and () should be moved to core BuildSystem -- self.mpiexec = self.mpiexec.replace(' ', '\\ ').replace('(', '\\(').replace(')', '\\)').replace('\ -',' -') -- if (hasattr(self, 'ompi_major_version') and int(self.ompi_major_version) >= 3): -- (out, err, ret) = Configure.executeShellCommand(self.mpiexec+' -help all', checkCommand = noCheck, timeout = 60, log = self.log, threads = 1) -- if out.find('--oversubscribe') >=0: -- self.mpiexec = self.mpiexec + ' --oversubscribe' -+ self.mpiexec = self.mpiexec + ' --oversubscribe' - - # using mpiexec environmental variables make sure mpiexec matches the MPI libraries and save the variables for testing in PetscInitialize() - # the variable HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE is not currently used. PetscInitialize() can check the existence of the environmental variable to - # determine if the program has been started with the correct mpiexec (will only be set for parallel runs so not clear how to check appropriately) -- (out, err, ret) = Configure.executeShellCommand(self.mpiexec+' -n 1 printenv', checkCommand = noCheck, timeout = 60, threads = 1, log = self.log) -- if ret: -- self.logWrite('Unable to run '+self.mpiexec+' with option "-n 1 printenv"\nThis could be ok, some MPI implementations such as SGI produce a non-zero status with non-MPI programs\n'+out+err) -- else: -- if out.find('MPIR_CVAR_CH3') > -1: -- if hasattr(self,'ompi_major_version'): raise RuntimeError("Your libraries are from OpenMPI but it appears your mpiexec is from MPICH"); -- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'MPIR_CVAR_CH3') -- elif out.find('MPIR_CVAR_CH3') > -1: -- if hasattr(self,'ompi_major_version'): raise RuntimeError("Your libraries are from OpenMPI but it appears your mpiexec is from MPICH"); -- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'MPICH') -- elif out.find('OMPI_COMM_WORLD_SIZE') > -1: -- if hasattr(self,'mpich_numversion'): raise RuntimeError("Your libraries are from MPICH but it appears your mpiexec is from OpenMPI"); -- self.addDefine('HAVE_MPIEXEC_ENVIRONMENTAL_VARIABLE', 'OMP') - - self.addMakeMacro('MPIEXEC', self.mpiexec) - self.mpiexec = self.mpiexec + ' -n 1' diff --git a/sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch b/sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch deleted file mode 100644 index c0dfd53a0112..000000000000 --- a/sci-mathematics/petsc/files/petsc-3.13.0-fix_sandbox_violation.patch +++ /dev/null @@ -1,18 +0,0 @@ -diff --git a/config/PETSc/options/installDir.py b/config/PETSc/options/installDir.py -index 860faf0f..87898811 100755 ---- a/config/PETSc/options/installDir.py -+++ b/config/PETSc/options/installDir.py -@@ -40,13 +40,6 @@ class Configure(config.base.Configure): - self.dir = os.path.abspath(os.path.expanduser(self.framework.argDB['prefix'])) - self.petscDir = self.dir - self.petscArch = '' -- try: -- os.makedirs(os.path.join(self.dir,'PETScTestDirectory')) -- os.rmdir(os.path.join(self.dir,'PETScTestDirectory')) -- except Exception as e: -- self.logPrint('Error trying to to test write permissions on directory '+str(e)) -- self.installSudoMessage = 'You do not have write permissions to the --prefix directory '+self.dir+'\nYou will be prompted for the sudo password for any external package installs' -- self.installSudo = 'sudo ' - else: - self.dir = os.path.abspath(os.path.join(self.petscdir.dir, self.arch.arch)) - self.petscDir = self.petscdir.dir diff --git a/sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch b/sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch deleted file mode 100644 index 1453fd519e81..000000000000 --- a/sci-mathematics/petsc/files/petsc-3.13.0-make_hypre_configure.patch +++ /dev/null @@ -1,90 +0,0 @@ -diff --git a/config/BuildSystem/config/packages/hypre.py b/config/BuildSystem/config/packages/hypre.py -index 4d915c31..1b05a1ee 100644 ---- a/config/BuildSystem/config/packages/hypre.py -+++ b/config/BuildSystem/config/packages/hypre.py -@@ -5,10 +5,6 @@ class Configure(config.package.GNUPackage): - def __init__(self, framework): - config.package.GNUPackage.__init__(self, framework) - #self.version = '2.18.2' -- self.minversion = '2.14' -- self.versionname = 'HYPRE_RELEASE_VERSION' -- self.versioninclude = 'HYPRE_config.h' -- self.requiresversion = 1 - #self.gitcommit = 'v'+self.version - self.gitcommit = '93baaa8c9' # v2.18.2+valgrind-fix - self.download = ['git://https://github.com/hypre-space/hypre','https://github.com/hypre-space/hypre/archive/'+self.gitcommit+'.tar.gz'] -diff --git a/include/petsc/private/petschypre.h b/include/petsc/private/petschypre.h -index 81ca7136..b403e70e 100644 ---- a/include/petsc/private/petschypre.h -+++ b/include/petsc/private/petschypre.h -@@ -6,12 +6,6 @@ - #include <HYPRE_config.h> - #include <HYPRE_utilities.h> - --/* from version 2.16 on, HYPRE_BigInt is 64 bit for 64bit installations -- and 32 bit for 32bit installations -> not the best name for a variable */ --#if PETSC_PKG_HYPRE_VERSION_LT(2,16,0) --typedef PetscInt HYPRE_BigInt; --#endif -- - /* - With scalar type == real, HYPRE_Complex == PetscScalar; - With scalar type == complex, HYPRE_Complex is double __complex__ while PetscScalar may be std::complex<double> -diff --git a/src/mat/impls/hypre/mhypre.c b/src/mat/impls/hypre/mhypre.c -index 0f7470e6..cce3e2b0 100644 ---- a/src/mat/impls/hypre/mhypre.c -+++ b/src/mat/impls/hypre/mhypre.c -@@ -15,10 +15,6 @@ - #include <_hypre_parcsr_ls.h> - #include <_hypre_sstruct_ls.h> - --#if PETSC_PKG_HYPRE_VERSION_LT(2,18,0) --#define hypre_ParCSRMatrixClone(A,B) hypre_ParCSRMatrixCompleteClone(A) --#endif -- - static PetscErrorCode MatHYPRE_CreateFromMat(Mat,Mat_HYPRE*); - static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat,Mat,HYPRE_IJMatrix); - static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat,HYPRE_IJMatrix); -@@ -63,7 +59,6 @@ static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o, HYPRE_IJMat - nnz_o[i] = 0; - } - } --#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0) - { /* If we don't do this, the columns of the matrix will be all zeros! */ - hypre_AuxParCSRMatrix *aux_matrix; - aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); -@@ -73,9 +68,6 @@ static PetscErrorCode MatHYPRE_IJMatrixPreallocate(Mat A_d, Mat A_o, HYPRE_IJMat - aux_matrix = (hypre_AuxParCSRMatrix*)hypre_IJMatrixTranslator(ij); - hypre_AuxParCSRMatrixNeedAux(aux_matrix) = 1; - } --#else -- PetscStackCallStandard(HYPRE_IJMatrixSetDiagOffdSizes,(ij,nnz_d,nnz_o)); --#endif - ierr = PetscFree(nnz_d);CHKERRQ(ierr); - ierr = PetscFree(nnz_o);CHKERRQ(ierr); - } -@@ -233,11 +225,7 @@ static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij) - /* need to shift the diag column indices (hdiag->j) back to global numbering since hypre is expecting this */ - hjj = hdiag->j; - pjj = pdiag->j; --#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0) - for (i=0; i<pdiag->nz; i++) hjj[i] = pjj[i]; --#else -- for (i=0; i<pdiag->nz; i++) hjj[i] = cstart + pjj[i]; --#endif - ierr = PetscArraycpy(hdiag->data,pdiag->a,pdiag->nz);CHKERRQ(ierr); - if (sameint) { - ierr = PetscArraycpy(hoffd->i,poffd->i,pA->A->rmap->n + 1);CHKERRQ(ierr); -@@ -247,12 +235,8 @@ static PetscErrorCode MatHYPRE_IJMatrixFastCopy_MPIAIJ(Mat A, HYPRE_IJMatrix ij) - - /* need to move the offd column indices (hoffd->j) back to global numbering since hypre is expecting this - If we hacked a hypre a bit more we might be able to avoid this step */ --#if PETSC_PKG_HYPRE_VERSION_GE(2,16,0) - PetscStackCallStandard(hypre_CSRMatrixBigInitialize,(hoffd)); - jj = (PetscInt*) hoffd->big_j; --#else -- jj = (PetscInt*) hoffd->j; --#endif - pjj = poffd->j; - for (i=0; i<poffd->nz; i++) jj[i] = garray[pjj[i]]; - diff --git a/sci-mathematics/petsc/petsc-3.13.1.ebuild b/sci-mathematics/petsc/petsc-3.13.1.ebuild deleted file mode 100644 index 23e1117a52c6..000000000000 --- a/sci-mathematics/petsc/petsc-3.13.1.ebuild +++ /dev/null @@ -1,196 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8} ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="https://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" - -PATCHES=( - "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch - "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch - "${FILESDIR}"/${PN}-3.13.0-make_hypre_configure.patch - "${FILESDIR}"/${PN}-3.13.0-do_not_run_mpiexec.patch -) - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - # bug 771711 - # configureMPIEXEC and configureMPITypes access /dev/nvidiactl - addpredict /dev/nvidiactl - - # bug 810841 - addpredict /dev/kfd - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake:BOOL=1 \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(use_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(use_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(use_with X x) \ - $(use_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(use_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(use_with boost) \ - $(use_with fftw) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc - - if use doc ; then - docinto html - dodoc -r docs/*.html docs/changes docs/manualpages - fi -} diff --git a/sci-mathematics/petsc/petsc-3.14.6.ebuild b/sci-mathematics/petsc/petsc-3.14.6.ebuild deleted file mode 100644 index 5bd50a9d32fe..000000000000 --- a/sci-mathematics/petsc/petsc-3.14.6.ebuild +++ /dev/null @@ -1,194 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7,8} ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="https://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug doc fftw - fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake -" - -PATCHES=( - "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch - "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch -) - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - # bug 771711 - # configureMPIEXEC and configureMPITypes access /dev/nvidiactl - addpredict /dev/nvidiactl - - # bug 810841 - addpredict /dev/kfd - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake:BOOL=1 \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(use_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(use_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(use_with X x) \ - $(use_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(use_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(use_with boost) \ - $(use_with fftw) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc - - if use doc ; then - docinto html - dodoc -r docs/*.html docs/changes docs/manualpages - fi -} diff --git a/sci-mathematics/petsc/petsc-3.15.0-r1.ebuild b/sci-mathematics/petsc/petsc-3.15.0-r1.ebuild deleted file mode 100644 index 5da94f15ff16..000000000000 --- a/sci-mathematics/petsc/petsc-3.15.0-r1.ebuild +++ /dev/null @@ -1,194 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..10} pypy3 ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="https://www.mcs.anl.gov/petsc" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug fftw -fortran hdf5 hypre int64 mpi metis mumps scotch superlu threads X" - -# readd sparse when suitesparse-5.6.0 is in tree -# sparse? ( >=sci-libs/suitesparse-5.6.0 >=sci-libs/cholmod-1.7.0 ) -# $(use_with sparse suitesparse) \ -RDEPEND=" - virtual/blas - virtual/lapack - - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[int64?,mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[int64?,mpi?] ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" -DEPEND=" - ${RDEPEND} - ${PYTHON_DEPS} -" -BDEPEND=" - dev-util/cmake - sys-apps/which - virtual/pkgconfig -" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" -PATCHES=( - "${FILESDIR}/${PN}-3.7.0-disable-rpath.patch" - "${FILESDIR}/${PN}-3.13.0-fix_sandbox_violation.patch" -) - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - # bug 771711 - # configureMPIEXEC and configureMPITypes access /dev/nvidiactl - addpredict /dev/nvidiactl - - # bug 810841 - addpredict /dev/kfd - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - tc-export AR RANLIB - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - AR="${AR}" \ - CFLAGS="${CFLAGS} -fPIC" \ - CPPFLAGS="${CPPFLAGS}" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - CXXOPTFLAGS="${CXXFLAGS} -fPIC" \ - FCFLAGS="${FCFLAGS} -fPIC" \ - FFLAGS="${FFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - MAKEFLAGS="${MAKEFLAGS}" \ - RANLIB="${RANLIB}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - --with-clanguage="${mylang}" \ - --with-cmake:BOOL=1 \ - --with-gnu-compilers \ - --with-imagemagick=0 \ - --with-matlab=0 \ - --with-petsc-arch="${PETSC_ARCH}" \ - --with-precision=double \ - --with-python=0 \ - --with-shared-libraries \ - --with-single-library \ - --with-windows-graphics=0 \ - $(petsc_enable debug debugging) \ - $(petsc_enable fortran) \ - $(petsc_enable mpi) \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_enable threads pthread) \ - $(petsc_select complex-scalars scalar-type complex real) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_with afterimage afterimage /usr/include/libAfterImage -lAfterImage) \ - $(petsc_with hypre hypre /usr/include/hypre -lHYPRE) \ - $(petsc_with superlu superlu /usr/include/superlu -lsuperlu) \ - $(petsc_with scotch ptscotch /usr/include/scotch [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack /usr/include/scalapack -lscalapack) \ - $(use cxx && ! use complex-scalars && echo "--with-c-support=1") \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(use int64 && echo "--with-index-size=64") \ - $(use_with boost) \ - $(use_with fftw) \ - $(use_with hdf5) \ - $(use_with mumps mumps /usr/include [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - $(use_with X x) \ - $(use_with X x11) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc -} diff --git a/sci-mathematics/petsc/petsc-3.15.0.ebuild b/sci-mathematics/petsc/petsc-3.15.0.ebuild deleted file mode 100644 index 8286baab9803..000000000000 --- a/sci-mathematics/petsc/petsc-3.15.0.ebuild +++ /dev/null @@ -1,190 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{8..10} ) - -inherit flag-o-matic fortran-2 python-any-r1 toolchain-funcs - -DESCRIPTION="Portable, Extensible Toolkit for Scientific Computation" -HOMEPAGE="https://www.mcs.anl.gov/petsc/" -SRC_URI="http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="afterimage boost complex-scalars cxx debug fftw - fortran hdf5 hypre mpi metis mumps scotch sparse superlu threads X" - -# hypre and superlu curretly exclude each other due to missing linking to hypre -# if both are enabled -REQUIRED_USE=" - afterimage? ( X ) - complex-scalars? ( !hypre !superlu ) - hdf5? ( mpi ) - hypre? ( cxx mpi !superlu ) - mumps? ( mpi scotch ) - scotch? ( mpi ) - superlu? ( !hypre ) -" - -RDEPEND=" - virtual/blas - virtual/lapack - afterimage? ( media-libs/libafterimage ) - boost? ( dev-libs/boost ) - fftw? ( sci-libs/fftw:3.0[mpi?] ) - hdf5? ( sci-libs/hdf5[mpi?] ) - hypre? ( >=sci-libs/hypre-2.18.0[mpi?] ) - metis? ( >=sci-libs/parmetis-4 ) - mpi? ( virtual/mpi[cxx?,fortran?] ) - mumps? ( sci-libs/mumps[mpi?] sci-libs/scalapack ) - scotch? ( sci-libs/scotch[mpi?] ) - sparse? ( sci-libs/suitesparse >=sci-libs/cholmod-1.7.0 ) - superlu? ( >=sci-libs/superlu-5 ) - X? ( x11-libs/libX11 ) -" - -DEPEND="${RDEPEND} - ${PYTHON_DEPS} - virtual/pkgconfig - dev-util/cmake - sys-apps/which -" - -PATCHES=( - "${FILESDIR}"/${PN}-3.7.0-disable-rpath.patch - "${FILESDIR}"/${PN}-3.13.0-fix_sandbox_violation.patch -) - -# petsc uses --with-blah=1 and --with-blah=0 to en/disable options -petsc_enable() { - use "$1" && echo "--with-${2:-$1}=1" || echo "--with-${2:-$1}=0" -} -# add external library: -# petsc_with use_flag libname libdir -# petsc_with use_flag libname include linking_libs -petsc_with() { - local myuse p=${2:-${1}} - if use ${1}; then - myuse="--with-${p}=1" - if [[ $# -ge 4 ]]; then - myuse="${myuse} --with-${p}-include=${EPREFIX}${3}" - shift 3 - myuse="${myuse} --with-${p}-lib=$@" - else - myuse="${myuse} --with-${p}-dir=${EPREFIX}${3:-/usr}" - fi - else - myuse="--with-${p}=0" - fi - echo ${myuse} -} - -# select between configure options depending on use flag -petsc_select() { - use "$1" && echo "--with-$2=$3" || echo "--with-$2=$4" -} - -src_configure() { - # bug 548498 - # PETSc runs mpi processes during configure that result in a sandbox - # violation by trying to open /proc/mtrr rw. This is not easy to - # mitigate because it happens in libpciaccess.so called by libhwloc.so, - # which is used by libmpi.so. - addpredict /proc/mtrr - # if mpi is built with knem support it needs /dev/knem too - addpredict /dev/knem - - # configureMPITypes with openmpi-2* insists on accessing the scaling - # governor rw. - addpredict /sys/devices/system/cpu/ - - # bug 771711 - # configureMPIEXEC and configureMPITypes access /dev/nvidiactl - addpredict /dev/nvidiactl - - # bug 810841 - addpredict /dev/kfd - - local mylang - local myopt - - use cxx && mylang="cxx" || mylang="c" - use debug && myopt="debug" || myopt="opt" - - # environmental variables expected by petsc during build - - export PETSC_DIR="${S}" - export PETSC_ARCH="linux-gnu-${mylang}-${myopt}" - - if use debug; then - strip-flags - filter-flags -O* - fi - - # C Support on CXX builds is enabled if possible i.e. when not using - # complex scalars (no complex type for both available at the same time) - - econf \ - scrollOutput=1 \ - FFLAGS="${FFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - LDFLAGS="${LDFLAGS}" \ - --prefix="${EPREFIX}/usr/$(get_libdir)/petsc" \ - --with-shared-libraries \ - --with-single-library \ - --with-clanguage=${mylang} \ - $(use cxx && ! use complex-scalars && echo "with-c-support=1") \ - --with-petsc-arch=${PETSC_ARCH} \ - --with-precision=double \ - --with-gnu-compilers \ - --with-blas-lapack-lib="$($(tc-getPKG_CONFIG) --libs blas lapack)" \ - $(petsc_enable debug debugging) \ - $(petsc_enable mpi) \ - $(petsc_select mpi cc mpicc $(tc-getCC)) \ - $(petsc_select mpi cxx mpicxx $(tc-getCXX)) \ - $(petsc_enable fortran) \ - $(use fortran && echo "$(petsc_select mpi fc mpif77 $(tc-getF77))") \ - $(petsc_enable mpi mpi-compilers) \ - $(petsc_select complex-scalars scalar-type complex real) \ - --with-windows-graphics=0 \ - --with-matlab=0 \ - --with-cmake:BOOL=1 \ - $(petsc_enable threads pthread) \ - $(petsc_with afterimage afterimage \ - /usr/include/libAfterImage -lAfterImage) \ - $(use_with hdf5) \ - $(petsc_with hypre hypre \ - /usr/include/hypre -lHYPRE) \ - $(use_with sparse suitesparse) \ - $(petsc_with superlu superlu \ - /usr/include/superlu -lsuperlu) \ - $(use_with X x) \ - $(use_with X x11) \ - $(petsc_with scotch ptscotch \ - /usr/include/scotch \ - [-lptesmumps,-lptscotch,-lptscotcherr,-lscotch,-lscotcherr]) \ - $(petsc_with mumps scalapack \ - /usr/include/scalapack -lscalapack) \ - $(use_with mumps mumps \ - /usr/include \ - [-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lpord]) \ - --with-imagemagick=0 \ - --with-python=0 \ - $(use_with boost) \ - $(use_with fftw) -} - -src_install() { - emake DESTDIR="${ED}" install - - # add PETSC_DIR to environmental variables - cat >> 99petsc <<- EOF - PETSC_DIR=${EPREFIX}/usr/$(get_libdir)/petsc - LDPATH=${EPREFIX}/usr/$(get_libdir)/petsc/lib - EOF - doenvd 99petsc -} |