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Diffstat (limited to 'sci-chemistry/tm-align/metadata.xml')
-rw-r--r-- | sci-chemistry/tm-align/metadata.xml | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/sci-chemistry/tm-align/metadata.xml b/sci-chemistry/tm-align/metadata.xml new file mode 100644 index 000000000000..1e724495b8e2 --- /dev/null +++ b/sci-chemistry/tm-align/metadata.xml @@ -0,0 +1,24 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-chemistry</herd> + <maintainer> + <email>jlec@gentoo.org</email> + </maintainer> + <longdescription> +TM-align is a computer algorithm for protein structure alignment using dynamic +programming and TM-score rotation matrix. An optimal alignment between two +proteins, as well as the TM-score, will be reported for each comparison. The +value of TM-score lies in (0,1]. In general, a comparison of TM-score smaller +0.2 indicates that there is no similarity between two structures; a TM-score +greater 0.5 means the structures share the same fold. + +What is the difference between TM-score and TM-align? The TM-score program +is to compare two models based on their given and known residue equivalency. +It is usually NOT applied to compare two proteins of different sequences. The +TM-align is a structural alignment program for comparing two proteins whose +sequences can be different. The TM-align will first find the best equivalent +residues of two proteins based on the structure similarity and then output a +TM-score. The TM-score values in both programs have the same definition. +</longdescription> +</pkgmetadata> |