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-rw-r--r--sci-chemistry/jmol/Manifest3
-rw-r--r--sci-chemistry/jmol/files/12.0.45/jmol-manifest.patch96
-rw-r--r--sci-chemistry/jmol/files/12.0.45/jmol-nointl.patch313
-rw-r--r--sci-chemistry/jmol/files/caffeine.xyz26
-rw-r--r--sci-chemistry/jmol/files/index.html14
-rw-r--r--sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch330
-rw-r--r--sci-chemistry/jmol/jmol-12.0.45-r1.ebuild100
-rw-r--r--sci-chemistry/jmol/jmol-12.2.27-r1.ebuild98
-rw-r--r--sci-chemistry/jmol/metadata.xml15
9 files changed, 0 insertions, 995 deletions
diff --git a/sci-chemistry/jmol/Manifest b/sci-chemistry/jmol/Manifest
deleted file mode 100644
index f2869dc0d9a0..000000000000
--- a/sci-chemistry/jmol/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-DIST Jmol-12.0.45-full.tar.gz 26501382 BLAKE2B 68db22b79ecfca719ac4dc6e971e5f3fbfc1c66cd669ea5e823e18da0fca28279afaf9cc8999398849df9d718a6efcbd975f913c62e0b558de5b785f63d62045 SHA512 b0e999335c039e5bde5e261c076f3eb75dd0c33a351445d5c086995d32b3fd03795b3a11dc57a06bf8ac39e74945f3c9f4547ecfbf18b56d827b9a42f5208c11
-DIST Jmol-12.2.27-full.tar.gz 29493780 BLAKE2B 8e4dc9334348847fe0b54baea1c0575d70a2e564a194474e8e007ec6dc60fdb46a8d139f5dad1686b32f23a4be11a76dfc6578e015d65a532a891bf24425c20e SHA512 a8608e64dc06b6d3b0cb7e911f0a224456a65bdc15c51d6b420ee6abf8d82cdcec9f54f6b1a51cfe032e2e074f173f50a88bcff783311de19ce9b95ad990ebca
-DIST jmol-selfSignedCertificate.store.tar 10240 BLAKE2B 04dc1504bc751d2a9829b12fe64f851885d308ffee170cffc871d59552d46bff8ab211e5bdb4ed00b596b3882a359669bf4ebf170cca37d518d76f140294d1e6 SHA512 2c3e9d1183a0b174273346d0fba0729caa415ef53fe01629a4c47daa2393c9e18ca3f57984911e6340197429cf0ee581c64bb9b6072db902102976030d9f2c23
diff --git a/sci-chemistry/jmol/files/12.0.45/jmol-manifest.patch b/sci-chemistry/jmol/files/12.0.45/jmol-manifest.patch
deleted file mode 100644
index 3b43c219d94f..000000000000
--- a/sci-chemistry/jmol/files/12.0.45/jmol-manifest.patch
+++ /dev/null
@@ -1,96 +0,0 @@
-diff -aurN jmol-11.0.3-orig/manifest/applet0.txt jmol-11.0.3/manifest/applet0.txt
---- jmol-11.0.3-orig/manifest/applet0.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet0.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,6 @@
-+Main-Class: JmolApplet
-+Sealed: true
-+
-+Name: org/jmol/api/
-+Sealed: false
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet1.txt jmol-11.0.3/manifest/applet1.txt
---- jmol-11.0.3-orig/manifest/applet1.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet1.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,6 @@
-+Name: org/jmol/api/
-+Sealed: false
-+
-+Name: org/jmol/applet/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet2.txt jmol-11.0.3/manifest/applet2.txt
---- jmol-11.0.3-orig/manifest/applet2.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet2.txt 2007-05-16 01:56:19.000000000 -0500
-@@ -0,0 +1,3 @@
-+Name: javax/vecmath/
-+
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet3.txt jmol-11.0.3/manifest/applet3.txt
---- jmol-11.0.3-orig/manifest/applet3.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet3.txt 2007-05-16 01:56:47.000000000 -0500
-@@ -0,0 +1,4 @@
-+
-+Name: org/jmol/g3d/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet4.txt jmol-11.0.3/manifest/applet4.txt
---- jmol-11.0.3-orig/manifest/applet4.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet4.txt 2007-05-16 01:57:05.000000000 -0500
-@@ -0,0 +1,4 @@
-+
-+Name: org/jmol/adapter/smarter/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet5.txt jmol-11.0.3/manifest/applet5.txt
---- jmol-11.0.3-orig/manifest/applet5.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet5.txt 2007-05-16 01:57:23.000000000 -0500
-@@ -0,0 +1,4 @@
-+Name: org/openscience/jmol/ui/
-+Sealed: true
-+
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet6.txt jmol-11.0.3/manifest/applet6.txt
---- jmol-11.0.3-orig/manifest/applet6.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet6.txt 2007-05-16 01:57:46.000000000 -0500
-@@ -0,0 +1,4 @@
-+
-+Name: org/jmol/viewer/
-+Sealed: true
-+
-diff -aurN jmol-11.0.3-orig/manifest/appletMain.txt jmol-11.0.3/manifest/appletMain.txt
---- jmol-11.0.3-orig/manifest/appletMain.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/appletMain.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,5 @@
-+Manifest-Version: 1.0
-+Sealed: true
-+
-+Name: org/jmol/api/
-+Sealed: false
-diff -aurN jmol-11.0.3-orig/manifest/appletMonolithic.txt jmol-11.0.3/manifest/appletMonolithic.txt
---- jmol-11.0.3-orig/manifest/appletMonolithic.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/appletMonolithic.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,7 @@
-+Main-Class: JmolApplet
-+Sealed: true
-+
-+Name: org/jmol/api/
-+Sealed: false
-+
-+
-diff -aurN jmol-11.0.3-orig/manifest/applet.txt jmol-11.0.3/manifest/applet.txt
---- jmol-11.0.3-orig/manifest/applet.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/applet.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1,2 @@
-+Manifest-Version: 1.0
-+Sealed: true
-\ No newline at end of file
-diff -aurN jmol-11.0.3-orig/manifest/application.txt jmol-11.0.3/manifest/application.txt
---- jmol-11.0.3-orig/manifest/application.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/application.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1 @@
-+Main-Class: org.openscience.jmol.app.Jmol
-diff -aurN jmol-11.0.3-orig/manifest/jvxl.txt jmol-11.0.3/manifest/jvxl.txt
---- jmol-11.0.3-orig/manifest/jvxl.txt 1969-12-31 18:00:00.000000000 -0600
-+++ jmol-11.0.3/manifest/jvxl.txt 2007-05-16 01:54:10.000000000 -0500
-@@ -0,0 +1 @@
-+Main-Class: org.openscience.jvxl.Jvxl
diff --git a/sci-chemistry/jmol/files/12.0.45/jmol-nointl.patch b/sci-chemistry/jmol/files/12.0.45/jmol-nointl.patch
deleted file mode 100644
index c1b22e83c615..000000000000
--- a/sci-chemistry/jmol/files/12.0.45/jmol-nointl.patch
+++ /dev/null
@@ -1,313 +0,0 @@
---- build.xml 2011-02-25 12:59:43.000000000 -0600
-+++ build.xml.new 2011-02-27 12:16:02.398959959 -0600
-@@ -110,10 +110,6 @@
- <srcfiles dir="doc/source"
- includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">
-- <srcfiles dir="doc/source"
-- includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -123,14 +119,6 @@
- <srcfiles dir="doc/source"
- includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />
- </uptodate>
-- <uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">
-- <srcfiles dir="doc/source"
-- includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />
-- </uptodate>
- </and>
- </condition>
-
-@@ -140,14 +128,6 @@
- <srcfiles dir="doc/source"
- includes="JmolDevelopersGuide.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolDevelopersGuide_fr.docbook.xml"/>
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">
-- <srcfiles dir="doc/source"
-- includes="JmolDevelopersGuide_de.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -157,14 +137,6 @@
- <srcfiles dir="doc/source"
- includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolAppletGuide_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolAppletGuide_de.html">
-- <srcfiles dir="doc/source"
-- includes="JmolAppletGuide_de.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -385,17 +357,12 @@
- </target>
-
- <target name="jar" id="jar"
-- depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">
-+ depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars">
- <copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >
- <fileset dir="build/doc/JmolUserGuide">
- <include name="**/*.html" />
- </fileset>
- </copy>
-- <copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >
-- <fileset dir="build/doc/JmolUserGuide_fr">
-- <include name="**/*.html" />
-- </fileset>
-- </copy>
- <copy todir="${classes.dir}/org/openscience/jmol/Data" >
- <fileset dir="build/doc/JmolHistory">
- <include name="**/*.html" />
-@@ -587,18 +554,6 @@
- <fileset dir="${appletjars.dir}" includes="**/*"/>
- </jar>
-
-- <for list="${all.JmolApplet.languages}" delimiter=","
-- param="current.Jmol.language">
-- <sequential>
-- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"
-- manifest="manifest/applet_i18n.txt" >
-- <fileset dir="${applet.classes.dir}">
-- <include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />
-- </fileset>
-- </jar>
-- </sequential>
-- </for>
--
- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">
- <fileset dir="${applet.classes.dir}">
- <include name="org/jmol/minimize/**" />
-@@ -712,7 +667,6 @@
- <include name="org/jmol/bspt/**" />
- <include name="org/jmol/g3d/**" />
- <include name="org/jmol/geodesic/**" />
-- <include name="org/jmol/i18n/**" />
- <include name="org/jmol/modelset/**" />
- <include name="org/jmol/script/**" />
- <include name="org/jmol/shape/**" />
-@@ -738,7 +692,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSurface.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Symmetry.jar" />
-- <fileset dir="${jmol.applet.build.dir}" includes="JmolApplet0_i18n_*.jar" />
- </indexjars>
- </jar>
- <!-- changes to this must be replicated below for the signed applet -->
-@@ -851,16 +804,6 @@
- keystore="selfSignedCertificate/selfSignedCertificate.store"
- storepass="selfSignedCertificate" alias="selfSignedCertificate" />
-
-- <for list="${all.JmolApplet.languages}" delimiter=","
-- param="current.Jmol.language">
-- <sequential>
-- <signjar jar="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"
-- signedjar="${jmol.applet.build.dir}/JmolAppletSigned0_i18n_@{current.Jmol.language}.jar"
-- keystore="selfSignedCertificate/selfSignedCertificate.store"
-- storepass="selfSignedCertificate" alias="selfSignedCertificate" />
-- </sequential>
-- </for>
--
- <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
- <!-- this one must be treated specially because of jar indexing
- we cannot simply rename the jar file, because the index has
-@@ -906,7 +849,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_ShapeSurface.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Smiles.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Symmetry.jar" />
-- <fileset dir="${jmol.applet.build.dir}" includes="JmolAppletSigned0_i18n_*.jar" />
- </indexjars>
- </jar>
- <signjar jar="${jmol.applet.build.dir}/JmolAppletSigned0.jar"
-@@ -944,18 +886,6 @@
- </fileset>
- </jar>
-
-- <for list="${all.JmolApplet.languages}" delimiter=","
-- param="current.Jmol.language">
-- <sequential>
-- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"
-- manifest="manifest/applet_i18n.txt" >
-- <fileset dir="${applet.classes.dir}">
-- <include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />
-- </fileset>
-- </jar>
-- </sequential>
-- </for>
--
- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">
- <fileset dir="${applet.classes.dir}">
- <include name="org/jmol/minimize/**" />
-@@ -1069,7 +999,6 @@
- <include name="org/jmol/bspt/**" />
- <include name="org/jmol/g3d/**" />
- <include name="org/jmol/geodesic/**" />
-- <include name="org/jmol/i18n/**" />
- <include name="org/jmol/modelset/**" />
- <include name="org/jmol/script/**" />
- <include name="org/jmol/shape/**" />
-@@ -1095,7 +1024,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSurface.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Symmetry.jar" />
-- <fileset dir="${jmol.applet.build.dir}" includes="JmolApplet0_i18n_*.jar" />
- </indexjars>
- </jar>
- <!-- changes to this must be replicated below for the signed applet -->
-@@ -1104,7 +1032,7 @@
- </target>
-
- <target name="dist" id="dist"
-- depends="doc,main-i18n,main,signed-applet">
-+ depends="doc,main,signed-applet">
- <!-- first build binary distribution -->
- <delete dir="build/dist/jmol-${version}"/>
- <mkdir dir="build/dist/jmol-${version}"/>
-@@ -1163,7 +1091,6 @@
- <fileset dir=".">
- <include name="applet.classes" />
- <include name="build.xml" />
-- <include name="build-i18n.xml" />
- </fileset>
- </copy>
-
-@@ -1246,7 +1173,6 @@
- <fileset dir=".">
- <include name="apisio.classes" />
- <include name="build.xml" />
-- <include name="build-i18n.xml" />
- </fileset>
- </copy>
-
-@@ -1342,7 +1268,7 @@
- <target name="xclean" id="xclean">
- </target>
-
-- <target name="spotless" id="spotless" depends="clean,spotless-i18n">
-+ <target name="spotless" id="spotless" depends="clean">
- <delete dir="build"/>
- <delete dir="${javadoc.dir}"/>
- <delete dir="packaging/rpm/dist"/>
-@@ -1406,16 +1332,6 @@
- <arg value="../../../doc/source/JmolGuide.docbook.xml" />
- <arg value="../../${docbook-xsl}/html/chunk.xsl" />
- </java>
-- <echo message="Generating user's guide (fr)" />
-- <mkdir dir="build/doc/JmolUserGuide_fr" />
-- <java fork="true" dir="build/doc/JmolUserGuide_fr"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <jvmarg value="${proxyHost}" />
-- <jvmarg value="${proxyPort}" />
-- <arg value="../../../doc/source/JmolGuide_fr.docbook.xml" />
-- <arg value="../../${docbook-xsl}/html/chunk.xsl" />
-- </java>
- </target>
-
- <target name="jmolHistory" id="jmolHistory"
-@@ -1430,26 +1346,6 @@
- <arg value="../../../doc/source/JmolHistory.xml" />
- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
- </java>
-- <echo message="Generating history of changes (fr)" />
-- <java fork="true" dir="build/doc/JmolHistory"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="ChangeLog_fr.html" />
-- <arg value="../../../doc/source/JmolHistory_fr.xml" />
-- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
-- <arg value="lang=fr" />
-- </java>
-- <echo message="Generating history of changes (nl)" />
-- <java fork="true" dir="build/doc/JmolHistory"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="ChangeLog_nl.html" />
-- <arg value="../../../doc/source/JmolHistory_nl.xml" />
-- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
-- <arg value="lang=nl" />
-- </java>
- </target>
-
- <target name="jmolDevelopersGuide" id="jmolDevelopersGuide"
-@@ -1463,24 +1359,6 @@
- <arg value="../../doc/source/JmolDevelopersGuide.docbook.xml" />
- <arg value="../${docbook-xsl}/html/docbook.xsl" />
- </java>
-- <echo message="Generating developer's guide (fr)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolDevelopersGuide_fr.html" />
-- <arg value="../../doc/source/JmolDevelopersGuide_fr.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
-- <echo message="Generating developer's guide (de)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolDevelopersGuide_de.html" />
-- <arg value="../../doc/source/JmolDevelopersGuide_de.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
- </target>
-
- <target name="jmolAppletGuide" id="jmolAppletGuide" depends="initdoc"
-@@ -1494,24 +1372,6 @@
- <arg value="../../doc/source/JmolAppletGuide.docbook.xml" />
- <arg value="../${docbook-xsl}/html/docbook.xsl" />
- </java>
-- <echo message="Generating applet guide (fr)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolAppletGuide_fr.html" />
-- <arg value="../../doc/source/JmolAppletGuide_fr.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
-- <echo message="Generating applet guide (de)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolAppletGuide_de.html" />
-- <arg value="../../doc/source/JmolAppletGuide_de.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
- </target>
-
- <target name="test" id="test" depends="main,compile-tests">
-@@ -1543,12 +1403,4 @@
- <jar destfile="${tests.dir}/Tests.jar" basedir="${test-classes.dir}" />
- </target>
-
-- <!-- i18n stuff -->
-- <target name="main-i18n" depends="classes">
-- <ant antfile="tools/build-i18n.xml" target="main-i18n"/>
-- </target>
-- <target name="spotless-i18n">
-- <ant antfile="tools/build-i18n.xml" target="spotless-i18n"/>
-- </target>
--
- </project>
diff --git a/sci-chemistry/jmol/files/caffeine.xyz b/sci-chemistry/jmol/files/caffeine.xyz
deleted file mode 100644
index f0325b049f3c..000000000000
--- a/sci-chemistry/jmol/files/caffeine.xyz
+++ /dev/null
@@ -1,26 +0,0 @@
-24
-Caffeine
-H -3.3804130 -1.1272367 0.5733036
-N 0.9668296 -1.0737425 -0.8198227
-C 0.0567293 0.8527195 0.3923156
-N -1.3751742 -1.0212243 -0.0570552
-C -1.2615018 0.2590713 0.5234135
-C -0.3068337 -1.6836331 -0.7169344
-C 1.1394235 0.1874122 -0.2700900
-N 0.5602627 2.0839095 0.8251589
-O -0.4926797 -2.8180554 -1.2094732
-C -2.6328073 -1.7303959 -0.0060953
-O -2.2301338 0.7988624 1.0899730
-H 2.5496990 2.9734977 0.6229590
-C 2.0527432 -1.7360887 -1.4931279
-H -2.4807715 -2.7269528 0.4882631
-H -3.0089039 -1.9025254 -1.0498023
-H 2.9176101 -1.8481516 -0.7857866
-H 2.3787863 -1.1211917 -2.3743655
-H 1.7189877 -2.7489920 -1.8439205
-C -0.1518450 3.0970046 1.5348347
-C 1.8934096 2.1181245 0.4193193
-N 2.2861252 0.9968439 -0.2440298
-H -0.1687028 4.0436553 0.9301094
-H 0.3535322 3.2979060 2.5177747
-H -1.2074498 2.7537592 1.7203047
diff --git a/sci-chemistry/jmol/files/index.html b/sci-chemistry/jmol/files/index.html
deleted file mode 100644
index 35a5d49217e2..000000000000
--- a/sci-chemistry/jmol/files/index.html
+++ /dev/null
@@ -1,14 +0,0 @@
-<html>
- <head>
- <title>Jmol Test Page</title>
- <div align="center"> <b>All the Sugar and Twice the Caffeine.</b> <br><br>
- <script src="./Jmol.js"></script>
- </head>
- <body>
- <script>
- jmolInitialize("./"); // REQUIRED
- jmolApplet(400, "load ./caffeine.xyz");
- </script></div>
- </body>
-</html>
-
diff --git a/sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch b/sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch
deleted file mode 100644
index 0a43faaf653d..000000000000
--- a/sci-chemistry/jmol/files/jmol-12.2.27-nointl.patch
+++ /dev/null
@@ -1,330 +0,0 @@
---- orig-build.xml 2012-05-31 13:42:43.943062427 -0500
-+++ build.xml 2012-05-31 14:01:01.691982062 -0500
-@@ -52,8 +52,6 @@
-
- <property file="proxy.properties" />
-
-- <import file="tools/build-i18n.xml"/>
--
- <path id="project.class.path">
- <fileset dir="${lib.dir}">
- <include name="*.jar" />
-@@ -111,10 +109,6 @@
- <srcfiles dir="doc/source"
- includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">
-- <srcfiles dir="doc/source"
-- includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -124,14 +118,6 @@
- <srcfiles dir="doc/source"
- includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />
- </uptodate>
-- <uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">
-- <srcfiles dir="doc/source"
-- includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />
-- </uptodate>
- </and>
- </condition>
-
-@@ -141,14 +127,6 @@
- <srcfiles dir="doc/source"
- includes="JmolDevelopersGuide.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolDevelopersGuide_fr.docbook.xml"/>
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">
-- <srcfiles dir="doc/source"
-- includes="JmolDevelopersGuide_de.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -158,14 +136,6 @@
- <srcfiles dir="doc/source"
- includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>
- </uptodate>
-- <uptodate targetfile="build/doc/JmolAppletGuide_fr.html">
-- <srcfiles dir="doc/source"
-- includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>
-- </uptodate>
-- <uptodate targetfile="build/doc/JmolAppletGuide_de.html">
-- <srcfiles dir="doc/source"
-- includes="JmolAppletGuide_de.docbook.xml"/>
-- </uptodate>
- </and>
- </condition>
-
-@@ -388,17 +358,12 @@
- </target>
-
- <target name="jar" id="jar"
-- depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n">
-+ depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars">
- <copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >
- <fileset dir="build/doc/JmolUserGuide">
- <include name="**/*.html" />
- </fileset>
- </copy>
-- <copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >
-- <fileset dir="build/doc/JmolUserGuide_fr">
-- <include name="**/*.html" />
-- </fileset>
-- </copy>
- <copy todir="${classes.dir}/org/openscience/jmol/Data" >
- <fileset dir="build/doc/JmolHistory">
- <include name="**/*.html" />
-@@ -603,18 +568,6 @@
- <fileset dir="${appletjars.dir}" includes="**/*"/>
- </jar>
-
-- <for list="${all.JmolApplet.languages}" delimiter=","
-- param="current.Jmol.language">
-- <sequential>
-- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"
-- manifest="manifest/applet_i18n.txt" >
-- <fileset dir="${applet.classes.dir}">
-- <include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />
-- </fileset>
-- </jar>
-- </sequential>
-- </for>
--
- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">
- <fileset dir="${applet.classes.dir}">
- <include name="org/jmol/minimize/**" />
-@@ -729,7 +682,6 @@
- <include name="org/jmol/constant/**" />
- <include name="org/jmol/g3d/**" />
- <include name="org/jmol/geodesic/**" />
-- <include name="org/jmol/i18n/**" />
- <include name="org/jmol/modelset/**" />
- <include name="org/jmol/script/**" />
- <include name="org/jmol/shape/**" />
-@@ -755,7 +707,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSurface.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Symmetry.jar" />
-- <fileset dir="${jmol.applet.build.dir}" includes="JmolApplet0_i18n_*.jar" />
- </indexjars>
- </jar>
- <!-- changes to this must be replicated below for the signed applet -->
-@@ -868,16 +819,6 @@
- keystore="selfSignedCertificate/selfSignedCertificate.store"
- storepass="selfSignedCertificate" alias="selfSignedCertificate" />
-
-- <for list="${all.JmolApplet.languages}" delimiter=","
-- param="current.Jmol.language">
-- <sequential>
-- <signjar jar="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"
-- signedjar="${jmol.applet.build.dir}/JmolAppletSigned0_i18n_@{current.Jmol.language}.jar"
-- keystore="selfSignedCertificate/selfSignedCertificate.store"
-- storepass="selfSignedCertificate" alias="selfSignedCertificate" />
-- </sequential>
-- </for>
--
- <!-- vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv -->
- <!-- this one must be treated specially because of jar indexing
- we cannot simply rename the jar file, because the index has
-@@ -905,7 +846,6 @@
- <include name="org/jmol/shape/**" />
- <include name="org/jmol/viewer/**" />
- <include name="org/jmol/util/**" />
-- <include name="org/jmol/i18n/**" />
- </fileset>
- <indexjars>
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Console.jar" />
-@@ -924,7 +864,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_ShapeSurface.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Smiles.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolAppletSigned0_Symmetry.jar" />
-- <fileset dir="${jmol.applet.build.dir}" includes="JmolAppletSigned0_i18n_*.jar" />
- </indexjars>
- </jar>
- <signjar jar="${jmol.applet.build.dir}/JmolAppletSigned0.jar"
-@@ -963,18 +902,6 @@
- </fileset>
- </jar>
-
-- <for list="${all.JmolApplet.languages}" delimiter=","
-- param="current.Jmol.language">
-- <sequential>
-- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_i18n_@{current.Jmol.language}.jar"
-- manifest="manifest/applet_i18n.txt" >
-- <fileset dir="${applet.classes.dir}">
-- <include name="org/jmol/translation/JmolApplet/@{current.Jmol.language}/**" />
-- </fileset>
-- </jar>
-- </sequential>
-- </for>
--
- <jar destfile="${jmol.applet.build.dir}/JmolApplet0_Minimize.jar" manifest="manifest/applet.txt">
- <fileset dir="${applet.classes.dir}">
- <include name="org/jmol/minimize/**" />
-@@ -1088,7 +1015,6 @@
- <include name="org/jmol/constant/**" />
- <include name="org/jmol/g3d/**" />
- <include name="org/jmol/geodesic/**" />
-- <include name="org/jmol/i18n/**" />
- <include name="org/jmol/modelset/**" />
- <include name="org/jmol/script/**" />
- <include name="org/jmol/shape/**" />
-@@ -1114,7 +1040,6 @@
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_ShapeSurface.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Smiles.jar" />
- <pathelement path="${jmol.applet.build.dir}/JmolApplet0_Symmetry.jar" />
-- <fileset dir="${jmol.applet.build.dir}" includes="JmolApplet0_i18n_*.jar" />
- </indexjars>
- </jar>
- <!-- changes to this must be replicated below for the signed applet -->
-@@ -1123,7 +1048,7 @@
- </target>
-
- <target name="dist" id="dist"
-- depends="doc,main-i18n,main,signed-applet">
-+ depends="doc,main,signed-applet">
- <!-- first build binary distribution -->
- <delete dir="build/dist/jmol-${version}"/>
- <mkdir dir="build/dist/jmol-${version}"/>
-@@ -1183,7 +1108,6 @@
- <fileset dir=".">
- <include name="applet.classes" />
- <include name="build.xml" />
-- <include name="build-i18n.xml" />
- </fileset>
- </copy>
-
-@@ -1278,7 +1202,6 @@
- <fileset dir=".">
- <include name="apisio.classes" />
- <include name="build.xml" />
-- <include name="build-i18n.xml" />
- </fileset>
- </copy>
-
-@@ -1374,7 +1297,7 @@
- <target name="xclean" id="xclean">
- </target>
-
-- <target name="spotless" id="spotless" depends="clean,spotless-i18n">
-+ <target name="spotless" id="spotless" depends="clean">
- <delete dir="build"/>
- <delete dir="${javadoc.dir}"/>
- <delete dir="packaging/rpm/dist"/>
-@@ -1438,16 +1361,6 @@
- <arg value="../../../doc/source/JmolGuide.docbook.xml" />
- <arg value="../../${docbook-xsl}/html/chunk.xsl" />
- </java>
-- <echo message="Generating user's guide (fr)" />
-- <mkdir dir="build/doc/JmolUserGuide_fr" />
-- <java fork="true" dir="build/doc/JmolUserGuide_fr"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <jvmarg value="${proxyHost}" />
-- <jvmarg value="${proxyPort}" />
-- <arg value="../../../doc/source/JmolGuide_fr.docbook.xml" />
-- <arg value="../../${docbook-xsl}/html/chunk.xsl" />
-- </java>
- </target>
-
- <target name="jmolHistory" id="jmolHistory"
-@@ -1462,26 +1375,6 @@
- <arg value="../../../doc/source/JmolHistory.xml" />
- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
- </java>
-- <echo message="Generating history of changes (fr)" />
-- <java fork="true" dir="build/doc/JmolHistory"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="ChangeLog_fr.html" />
-- <arg value="../../../doc/source/JmolHistory_fr.xml" />
-- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
-- <arg value="lang=fr" />
-- </java>
-- <echo message="Generating history of changes (nl)" />
-- <java fork="true" dir="build/doc/JmolHistory"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="ChangeLog_nl.html" />
-- <arg value="../../../doc/source/JmolHistory_nl.xml" />
-- <arg value="../../../doc/source/JmolHistoryToHtml.xsl" />
-- <arg value="lang=nl" />
-- </java>
- </target>
-
- <target name="jmolDevelopersGuide" id="jmolDevelopersGuide"
-@@ -1495,24 +1388,6 @@
- <arg value="../../doc/source/JmolDevelopersGuide.docbook.xml" />
- <arg value="../${docbook-xsl}/html/docbook.xsl" />
- </java>
-- <echo message="Generating developer's guide (fr)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolDevelopersGuide_fr.html" />
-- <arg value="../../doc/source/JmolDevelopersGuide_fr.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
-- <echo message="Generating developer's guide (de)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolDevelopersGuide_de.html" />
-- <arg value="../../doc/source/JmolDevelopersGuide_de.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
- </target>
-
- <target name="jmolAppletGuide" id="jmolAppletGuide" depends="initdoc"
-@@ -1526,24 +1401,6 @@
- <arg value="../../doc/source/JmolAppletGuide.docbook.xml" />
- <arg value="../${docbook-xsl}/html/docbook.xsl" />
- </java>
-- <echo message="Generating applet guide (fr)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolAppletGuide_fr.html" />
-- <arg value="../../doc/source/JmolAppletGuide_fr.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
-- <echo message="Generating applet guide (de)" />
-- <java fork="true" dir="build/doc"
-- classname="com.icl.saxon.StyleSheet"
-- classpath="${lib.dir}/saxon.jar" >
-- <arg value="-o" />
-- <arg value="JmolAppletGuide_de.html" />
-- <arg value="../../doc/source/JmolAppletGuide_de.docbook.xml" />
-- <arg value="../${docbook-xsl}/html/docbook.xsl" />
-- </java>
- </target>
-
- <target name="test" id="test" depends="main,compile-tests">
-@@ -1575,12 +1432,4 @@
- <jar destfile="${tests.dir}/Tests.jar" basedir="${test-classes.dir}" />
- </target>
-
-- <!-- i18n stuff -->
-- <target name="main-i18n" depends="classes">
-- <ant antfile="tools/build-i18n.xml" target="main-i18n"/>
-- </target>
-- <target name="spotless-i18n">
-- <ant antfile="tools/build-i18n.xml" target="spotless-i18n"/>
-- </target>
--
- </project>
diff --git a/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild b/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild
deleted file mode 100644
index 589cc469b42f..000000000000
--- a/sci-chemistry/jmol/jmol-12.0.45-r1.ebuild
+++ /dev/null
@@ -1,100 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-WEBAPP_OPTIONAL="yes"
-
-inherit eutils webapp java-pkg-2 java-ant-2
-
-MY_P=Jmol
-
-DESCRIPTION="Java molecular viever for 3-D chemical structures"
-HOMEPAGE="http://jmol.sourceforge.net/"
-SRC_URI="
- mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz
- https://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
-
-WEBAPP_MANUAL_SLOT="yes"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-LICENSE="LGPL-2.1"
-IUSE="client-only vhosts"
-
-COMMON_DEP="
- dev-java/commons-cli:1
- dev-java/itext:0
- sci-libs/jmol-acme:0
- sci-libs/vecmath-objectclub:0"
-
-RDEPEND=">=virtual/jre-1.4
- ${COMMON_DEP}"
-DEPEND=">=virtual/jdk-1.4
- !client-only? ( ${WEBAPP_DEPEND} )
- ${COMMON_DEP}"
-
-pkg_setup() {
- use client-only || webapp_pkg_setup
- java-pkg-2_pkg_setup
-}
-
-src_prepare() {
- epatch \
- "${FILESDIR}"/${PV}/${PN}-nointl.patch \
- "${FILESDIR}"/${PV}/${PN}-manifest.patch
-
- mkdir "${S}"/selfSignedCertificate || die "Failed to create Cert directory."
- cp "${WORKDIR}"/selfSignedCertificate.store "${S}"/selfSignedCertificate/ \
- || die "Failed to install Cert file."
-
- rm -v "${S}"/*.jar "${S}"/plugin-jars/*.jar || die
- cd "${S}/jars"
-
-# We still have to use netscape.jar on amd64 until a nice way to include plugin.jar comes along.
- if use amd64; then
- mv -v netscape.jar netscape.tempjar || die "Failed to move netscape.jar."
- rm -v *.jar *.tar.gz || die "Failed to remove jars."
- mv -v netscape.tempjar netscape.jar || die "Failed to move netscape.tempjar."
- fi
-
- java-pkg_jar-from vecmath-objectclub vecmath-objectclub.jar vecmath1.2-1.14.jar
- java-pkg_jar-from itext iText.jar itext-1.4.5.jar
- java-pkg_jar-from jmol-acme jmol-acme.jar Acme.jar
- java-pkg_jar-from commons-cli-1 commons-cli.jar commons-cli-1.0.jar
-
- mkdir -p "${S}/build/appjars" || die
-}
-
-src_compile() {
- # prevent absorbing dep's classes
- eant -Dlibjars.uptodate=true main
-}
-
-src_install() {
- java-pkg_dojar build/Jmol.jar
- dohtml -r build/doc/* || die "Failed to install html docs."
- dodoc *.txt doc/*license* || die "Failed to install licenses."
-
- java-pkg_dolauncher ${PN} --main org.openscience.jmol.app.Jmol \
- --java_args "-Xmx512m"
-
- if ! use client-only ; then
- webapp_src_preinst
- cp Jmol.js build/Jmol.jar "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp build/JmolApplet*.jar "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp applet.classes "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp -r build/classes/* "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp -r build/appletjars/* "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp "${FILESDIR}"/caffeine.xyz "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp "${FILESDIR}"/index.html "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
-
- webapp_src_install
- fi
-}
-
-pkg_postinst() {
- use client-only || webapp_pkg_postinst
-}
-
-pkg_prerm() {
- use client-only || webapp_pkg_prerm
-}
diff --git a/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild b/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild
deleted file mode 100644
index a109067c1d7d..000000000000
--- a/sci-chemistry/jmol/jmol-12.2.27-r1.ebuild
+++ /dev/null
@@ -1,98 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-WEBAPP_OPTIONAL="yes"
-
-inherit eutils webapp java-pkg-2 java-ant-2
-
-MY_P=Jmol
-
-DESCRIPTION="Java molecular viever for 3-D chemical structures"
-HOMEPAGE="http://jmol.sourceforge.net/"
-SRC_URI="
- mirror://sourceforge/${PN}/${MY_P}-${PV}-full.tar.gz
- https://dev.gentoo.org/~jlec/distfiles/${PN}-selfSignedCertificate.store.tar"
-
-LICENSE="LGPL-2.1"
-KEYWORDS="~amd64 ~x86"
-IUSE="+client-only vhosts"
-
-WEBAPP_MANUAL_SLOT="yes"
-SLOT="0"
-
-COMMON_DEP="
- dev-java/commons-cli:1
- dev-java/itext:0
- sci-libs/jmol-acme:0
- sci-libs/vecmath-objectclub:0
- sci-libs/naga"
-RDEPEND=">=virtual/jre-1.5
- ${COMMON_DEP}"
-DEPEND=">=virtual/jdk-1.5
- dev-java/saxon:6.5
- !client-only? ( ${WEBAPP_DEPEND} )
- ${COMMON_DEP}"
-
-pkg_setup() {
- use client-only || webapp_pkg_setup
- java-pkg-2_pkg_setup
-}
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-nointl.patch
-
- rm -v "${S}"/*.jar "${S}"/plugin-jars/*.jar || die
- cd "${S}/jars"
-
-# We still have to use netscape.jar on amd64 until a nice way to include plugin.jar comes along.
- if use amd64; then
- mv -v netscape.jar netscape.tempjar || die "Failed to move netscape.jar."
- rm -v *.jar *.tar.gz || die "Failed to remove jars."
- mv -v netscape.tempjar netscape.jar || die "Failed to move netscape.tempjar."
- fi
-
- java-pkg_jar-from vecmath-objectclub vecmath-objectclub.jar vecmath1.2-1.14.jar
- java-pkg_jar-from itext iText.jar itext-1.4.5.jar
- java-pkg_jar-from jmol-acme jmol-acme.jar Acme.jar
- java-pkg_jar-from commons-cli-1 commons-cli.jar commons-cli-1.0.jar
- java-pkg_jar-from naga
- java-pkg_jar-from --build-only saxon-6.5 saxon.jar
-
- mkdir -p "${S}/build/appjars" || die
-}
-
-src_compile() {
- # prevent absorbing dep's classes
- eant -Dlibjars.uptodate=true main
-}
-
-src_install() {
- java-pkg_dojar build/Jmol.jar
- dohtml -r build/doc/* || die "Failed to install html docs."
- dodoc *.txt doc/*license* || die "Failed to install licenses."
-
- java-pkg_dolauncher ${PN} --main org.openscience.jmol.app.Jmol \
- --java_args "-Xmx512m"
-
- if ! use client-only ; then
- webapp_src_preinst
- cp Jmol.js build/Jmol.jar "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp build/JmolApplet*.jar "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp applet.classes "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp -r build/classes/* "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp -r build/appletjars/* "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp "${FILESDIR}"/caffeine.xyz "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
- cp "${FILESDIR}"/index.html "${ED}"${MY_HTDOCSDIR} || die "${cmd} failed."
-
- webapp_src_install
- fi
-}
-
-pkg_postinst() {
- use client-only || webapp_pkg_postinst
-}
-
-pkg_prerm() {
- use client-only || webapp_pkg_prerm
-}
diff --git a/sci-chemistry/jmol/metadata.xml b/sci-chemistry/jmol/metadata.xml
deleted file mode 100644
index 888f06b55ce5..000000000000
--- a/sci-chemistry/jmol/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <use>
- <flag name="client-only">Install the viewer only, no applet files for httpd
- </flag>
- </use>
- <upstream>
- <remote-id type="sourceforge">jmol</remote-id>
- </upstream>
-</pkgmetadata>