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* sci-biology/abyss: respect AR override, bug #725300Sergei Trofimovich2020-05-251-0/+11
| | | | | | | | | | Use AM_PROG_AR to default to standard AR discovery instead of make's 'ar'. Reported-by: Agostino Sarubbo Closes: https://bugs.gentoo.org/725300 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-biology/abyss: Remove oldDavid Seifert2016-12-207-158/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3183
* sci-biology/abyss: bump up to 1.9.0, tweak for gcc-6, bug #594254Sergei Trofimovich2016-09-182-0/+52
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | On gcc-6 build failed as: ``` In file included from AssemblyAlgorithms.cpp:4:0: ../DataLayer/FastaReader.h: In member function ‘FastaReader::operator void*() const’: ../DataLayer/FastaReader.h:49:35: error: cannot convert ‘std::istream {aka std::basic_istream<char>}’ to ‘void*’ ... operator void*() const { return m_in; } ^~~~ ``` In the following source: ```c++ static bool existFile(const char* f) { ifstream file(f); return file; } ``` c++98 provides file->operator void*() c++11 provides file->explicit operator bool() Hence the failure on c++11. The change adds explicit casts around ifstream. Reported-by: Toralf Förster Bug: https://bugs.gentoo.org/594254 Package-Manager: portage-2.3.0
* sci-biology/abyss: Remove oldDavid Seifert2016-04-031-15/+0
| | | | Package-Manager: portage-2.2.28
* sci-biology/abyss: Latest ebuild from science-overlayDavid Seifert2016-04-031-0/+40
| | | | | | * EAPI=6 Package-Manager: portage-2.2.28
* proj/gentoo: Initial commitRobin H. Johnson2015-08-085-0/+81
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed