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* sci-libs/openblas: drop 0.3.15Sam James2021-08-102-199/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/fflas-ffpack: patch to avoid -fabi-version=6.Michael Orlitzky2021-08-072-0/+32
| | | | | | | | | | | | | | This is part two of a quick fix to prevent -fabi-version=6 from finding its way into CXXFLAGS with givaro and fflas-ffpack. A better fix is upstream, but difficult to backport. Since in Gentoo we don't support gcc-4.x, I've just deleted the stuff. I've made a new revision because the -fabi-version flags wind up in "fflas-ffpack-config --cflags". Closes: https://bugs.gentoo.org/741434 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/givaro: new revision to eliminate -fabi-version=6.Michael Orlitzky2021-08-072-0/+92
| | | | | | | | | | | This is just a quick hack directly to the ./configure script to ensure that the current version of givaro doesn't erroneously detect gcc-4.x where none exists. A real fix is already upstreamed, but not in a release, and is not easy to backport. Bug: https://bugs.gentoo.org/741434 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fflas-ffpack: fix linking with slibtool.Michael Orlitzky2021-08-072-0/+71
| | | | | | | | | | | I've backported the patch from upstream PR 339 to fix this issue in the release tarball. I had intended to wait for an upstream comment... but we might be waiting a while. Thanks to orbea for debugging and fixing the problem! Closes: https://bugs.gentoo.org/787746 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/fflas-ffpack: disable a (sometimes) failing test case.Michael Orlitzky2021-08-072-1/+46
| | | | | | | | | | | One of the test programs for fflas-ffpack is failing on both Gentoo and Conda, and may indicate an upstream problem. In the meantime, having the test suite fail is of no use to Gentoo users. This commit disables the test until we can figure out the right way to fix it. Closes: https://bugs.gentoo.org/725446 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/orocos_kdl: remove catkin supportAlexis Ballier2021-08-064-68/+6
| | | | | | | | and unused patches and bump subslot Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/orocos_kdl: bump to 1.5.0Alexis Ballier2021-08-062-1/+1
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/cdd+: add github upstream metadataSam James2021-08-051-0/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cdd+: reformat metadata.xmlSam James2021-08-051-9/+9
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cdd+: update EAPI 5 -> 7, fix build with GCC 11Sam James2021-08-056-49/+98
| | | | | Closes: https://bugs.gentoo.org/787941 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/qd: new revision that works with autoconf-2.71.Michael Orlitzky2021-08-0413-0/+685
| | | | | | | | | | | | | | In this -r1, I've added a patch that solves bug 775215 by not setting CC=$CXX during ./configure. At the same time, I've refactored our other build system patch into a series of smaller patches (with explanatory commit messages) that can be sent upstream. Finally, I've removed USE=static-libs support from the ebuild. It doesn't do anyone any good. Closes: https://bugs.gentoo.org/775215 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/coinor-bcp: fix build with GCC 11Sam James2021-08-052-0/+40
| | | | | Closes: https://bugs.gentoo.org/786306 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/coinor-couenne: add link to upstream PRSam James2021-08-041-0/+3
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ceres-solver: Bump to 2.0.0Andrew Ammerlaan2021-08-043-0/+115
| | | | | | | | | | | | | | * Based off of sci-libs/ceres-solver-1.14.0. * Uses existing `USE=openmp` to set new CERES_THREADING_MODEL cmake variable. * Fixes error where `Eigen3Config.cmake` is missing. * Add `USE=system-mathjax` and associated patch to enable generated doc to use local MathJax to render embedded math. Closes: https://bugs.gentoo.org/806409 Signed-off-by: Brian R McCarter <brian.r.mccarter.ctr@us.navy.mil> Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/p4est: remove USE=static-libsDavid Seifert2021-08-042-36/+38
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/p4est: drop 2.2-r100David Seifert2021-08-042-122/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libsc: remove USE=static-libsDavid Seifert2021-08-042-38/+36
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libsc: drop 2.2-r100David Seifert2021-08-043-152/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/indilib: Stabilize 1.9.1-r1 amd64, #806306Sam James2021-08-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: Stabilize 2.7 ppc64, #804795Sam James2021-08-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/camd: Stabilize 2.4.6-r1 arm64, #804801Sam James2021-08-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: Stabilize 2.7 arm64, #804795Sam James2021-08-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: Stabilize 3.19.0 arm64, #804789Sam James2021-08-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/rtabmap: bump to 0.20.13Alexis Ballier2021-08-034-34/+15
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/pcl: update subslotAlexis Ballier2021-08-032-2/+2
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/pcl: use cmake eclassAlexis Ballier2021-08-032-4/+4
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/pcl: bump to 1.12.0Alexis Ballier2021-08-032-1/+1
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/vtk: fix auto-detection of CUDA archBernd Waibel2021-08-021-2/+23
| | | | | | | | | | | | | | | | In some cases, the CUDA architecture is not successfully detected, when 'native' is passed to the build system. For this, check for the environment variable VTK_CUDA_ARCH to be exported and pass that value from the environment instead, if it's a valid CUDA architecture name. This ignores the 'fermi' architecture, as it's no longer supported by current dev-util/nvidia-cuda-toolkit-11* versions. Closes: https://bugs.gentoo.org/803818 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/21855 Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
* sci-libs/libint: Stabilize 2.6.0-r5 x86, #804798Sam James2021-08-021-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/branca: test dependencyAlfredo Tupone2021-08-021-0/+1
| | | | | | Closes: https://bugs.gentoo.org/806061 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/branca: HomepageInSrcUriAlfredo Tupone2021-08-011-1/+1
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/tensorflow: Add python3_9 and build against proto-3.16Jason Zaman2021-08-012-0/+411
| | | | | | | | | | | | Protobuf 3.16 changed the status API in https://github.com/protocolbuffers/protobuf/commit/59ea5c8f19de47dc15cbce2e2e97d9de01d50fb9 so must be patched. All deps now support python3_9 as well so enable support in TF Closes: https://bugs.gentoo.org/800824 Closes: https://bugs.gentoo.org/802732 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow-estimator: Add python3_9Jason Zaman2021-08-011-1/+1
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/keras-preprocessing: Add python3_9Jason Zaman2021-08-011-1/+1
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/keras-applications: Add python3_9Jason Zaman2021-08-011-2/+2
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/branca: Add to treeAlfredo Tupone2021-08-014-0/+61
| | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/libint: Stabilize 2.6.0-r5 amd64, #804798Sam James2021-07-311-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/camd: Stabilize 2.4.6-r1 arm, #804801Sam James2021-07-311-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gsl: Stabilize 2.7 arm, #804795Sam James2021-07-311-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: ppc64 stable wrt bug #804789Agostino Sarubbo2021-07-301-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/camd: ppc64 stable wrt bug #804801Agostino Sarubbo2021-07-301-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/libqalculate: ppc stable wrt bug #804789Agostino Sarubbo2021-07-301-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/camd: ppc stable wrt bug #804801Agostino Sarubbo2021-07-301-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/libqalculate: increment subslotSam James2021-07-291-1/+1
| | | | | | | SONAME changed between 3.20 and 3.20.1. Reported-by: Ben Kohler <bkohler@gentoo.org> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: drop 3.20.0Sam James2021-07-292-75/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/libqalculate: add 3.20.1Sam James2021-07-292-0/+75
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/camd: amd64 stable wrt bug #804801Agostino Sarubbo2021-07-291-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gsl: amd64 stable wrt bug #804795Agostino Sarubbo2021-07-291-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/libqalculate: amd64 stable wrt bug #804789Agostino Sarubbo2021-07-291-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/camd: x86 stable wrt bug #804801Agostino Sarubbo2021-07-291-1/+1
| | | | | | Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>