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* sci-libs/tensorflow: bump 2.1.0Jason Zaman2020-01-264-47/+7
| | | | | | | | Closes: https://bugs.gentoo.org/701334 Closes: https://bugs.gentoo.org/704490 Closes: https://bugs.gentoo.org/701342 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* */*: Drop stable alpha keywordsMatt Turner2020-01-2524-24/+24
| | | | Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/getdata: Revbump post dep changeMichał Górny2020-01-221-0/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/mathgl: Revbump post dep changeMichał Górny2020-01-221-0/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/nlopt: Revbump post dep changeMichał Górny2020-01-221-0/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/pymmlib: Revbump post dep changeMichał Górny2020-01-221-0/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/libgeodecomp: Fix file collision with libflatarrayKurt Kanzenbach2020-01-212-16/+58
| | | | | | | | | | | | | | | | | | | As of commit 948ee21633c0 ("sci-libs/libgeodecomp: added dependency to libflatarray") libgeodecomp depends on libflatarray which is correct. Therefore, libgeodecomp uses the system installed libflatarray. However, it also bundles its own version libflatarray and installs that one unconditionally which results in the file collision. Thus, simply don't install the libflatarray files whenever the system one is used. That resolves the issue. While here, bump EAPI to 7 and remove visit use flag. VisIt has been removed. Bug: https://bugs.gentoo.org/688932 Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Kurt Kanzenbach <kurt@kmk-computers.de> Closes: https://github.com/gentoo/gentoo/pull/14368 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/m4ri: various upstreamed patchesFrançois Bissey2020-01-203-1/+175
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/m4ri: New upstream release.François Bissey2020-01-202-0/+47
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/symmetrica: new C library for representation theory and more.Michael Orlitzky2020-01-203-0/+49
| | | | | | | | | | | | | | | | This package has been forked under the SageMath umbrella, and the build system has been overhauled to the point that maintaining it will not be a punishment. The new v3.0.1 is the first release of the fork if you pretend that v3.0.0 never happened (I forgot to include the documentation in the release tarball). The upstream SageMath project can detect and use the system copy of symmetrica now, so this will allow Gentoo users of SageMath to avoid pointless rebuilds of symmetrica. Closes: https://bugs.gentoo.org/232014 Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/shogun: Use HTTPSMichał Górny2020-01-161-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_learn: Use HTTPSMichał Górny2020-01-162-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/shogun: Remove Python 2Michał Górny2020-01-161-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/Shapely: Remove Python 2Michał Górny2020-01-161-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_timeseries: Remove Python 2Michał Górny2020-01-161-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_timeseries: Remove oldMichał Górny2020-01-161-47/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_optimization: Remove Python 2Michał Górny2020-01-161-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_optimization: Remove oldMichał Górny2020-01-161-31/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikits_learn: Remove Python 2Michał Górny2020-01-163-3/+3
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/pymmlib: Permit numpy-python2Michał Górny2020-01-161-2/+5
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/plplot: Remove oldMichał Górny2020-01-168-830/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/numkit: Remove Python 2Michał Górny2020-01-161-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/nlopt: Permit numpy-python2Michał Górny2020-01-161-2/+5
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/mathgl: Permit numpy-python2Michał Górny2020-01-161-2/+8
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/libsigrok: Remove Python 2Michał Górny2020-01-164-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/keras-preprocessing: Remove Python 2Michał Górny2020-01-162-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/keras-applications: Remove Python 2Michał Górny2020-01-162-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/getdata: Permit numpy-python2Michał Górny2020-01-161-2/+8
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/libbraiding: new library for braid group computation.Michael Orlitzky2020-01-153-0/+60
| | | | | | | | | | François Bissey had an ebuild for the latest version of this package in the sage-on-gentoo overlay, so I've imported that after adding a few comments and an EAPI=7 bump. Closes: https://bugs.gentoo.org/705432 Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/cddlib: new version 094j.Michael Orlitzky2020-01-153-8/+81
| | | | | | | | | | | | | | | | | | | | | | | | | François Bissey had an ebuild for the latest version of this package in the sage-on-gentoo overlay, so I've imported it with minor changes: * Updated to EAPI=7 (no related changes). * Dropped the unused autotools.eclass inherit. * Changed GPL-2 to GPL-2+, since the files that do have copyright headers have the "or any later version" bit. * Dropped the DOCS declaration; they're all covered by einstalldocs. * Added IUSE=examples. * Reworked the documentation/example installation logic. The new autotools build system installs everything by default, so if the user doesn't want something, we have to kill it from $ED. I've also added the upstream remote to metadata.xml, and added myself and François as maintainers in the future. SageMath uses two cddlib executables only present as of this version, so it's a prerequisite for moving more of SageMath into the tree. Closes: https://bugs.gentoo.org/705218 Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/superlu_mt: amd64 stable wrt bug #705134Agostino Sarubbo2020-01-141-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/sundials: amd64 stable wrt bug #705134Agostino Sarubbo2020-01-141-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/klu: amd64 stable wrt bug #705134Agostino Sarubbo2020-01-141-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/hypre: amd64 stable wrt bug #705134Agostino Sarubbo2020-01-141-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/cantera: amd64 stable wrt bug #705134Agostino Sarubbo2020-01-141-1/+1
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/btf: amd64 stable wrt bug #705134Agostino Sarubbo2020-01-141-2/+2
| | | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/voro++: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/superlu_mt: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/superlu: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/scalapack: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/nlopt: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/mumps: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libaec: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-133-3/+3
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/levmar: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/dmlc-core: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-131-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ceres-solver: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-132-2/+2
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ccfits: [QA] Fix HomepageInSrcUriDavid Seifert2020-01-132-2/+2
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/votca-tools: version bumpChristoph Junghans2020-01-124-17/+78
| | | | | Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Christoph Junghans <junghans@gentoo.org>
* sci-libs/parmetis: Fix LICENSE, add mirror and bindist restrictions.Ulrich Müller2020-01-111-2/+3
| | | | | | Closes: https://bugs.gentoo.org/702362 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-libs/metis: Fix LICENSE, add mirror and bindist restrictions.Ulrich Müller2020-01-111-2/+3
| | | | | | Closes: https://bugs.gentoo.org/702360 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Ulrich Müller <ulm@gentoo.org>