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* sci-libs/openblas: work around test parallelism issue.Michael Orlitzky2023-07-121-3/+3
| | | | | | | | | | Something weird is going on when we run "make tests" and the solution isn't obvious to me, so let's -j1 it for now. Unrelated to that, we don't need to build our custom shared-blas-lapack target unless USE=eselect-ldso is set, so let's not. Closes: https://bugs.gentoo.org/910174 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/linux-gpib-modules: add small patch for kernel 6.4Andrew Ammerlaan2023-07-122-0/+29
| | | | | Closes: https://bugs.gentoo.org/910230 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/dealii: add 9.5.0Matthias Maier2023-07-102-0/+170
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/dealii: update live ebuildMatthias Maier2023-07-101-10/+7
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/armadillo: Stabilize 11.4.0 amd64, #899446Arthur Zamarin2023-07-101-2/+2
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/openblas: disable LTO for now.Michael Orlitzky2023-07-091-1/+4
| | | | | | | | | There's an upstream issue open for the type mismatches, but it doesn't look like an easy fix. For now we work around it by disabling LTO, which disables -Werror=lto-type-mismatch as well. Closes: https://bugs.gentoo.org/878987 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* dev-python/h5py: keyword it and its dependencies for ~arm64-macos.Benda Xu2023-07-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | dev-python/six: keyword 1.16.0-r1 for ~arm64-macos dev-python/regex: keyword 2023.6.3 for ~arm64-macos dev-python/python-dateutil: keyword 2.8.2-r1 for ~arm64-macos dev-python/idna: keyword 3.4 for ~arm64-macos dev-python/attrs: keyword 23.1.0 for ~arm64-macos dev-python/numpy: keyword 1.24.4-r1 for ~arm64-macos dev-python/jsonschema: keyword 4.17.3 for ~arm64-macos dev-python/arrow: keyword 1.2.3 for ~arm64-macos dev-python/fqdn: keyword 1.5.1-r2 for ~arm64-macos dev-python/hatch-fancy-pypi-readme: keyword 23.1.0 for ~arm64-macos dev-python/hatch-vcs: keyword 0.3.0 for ~arm64-macos dev-python/isoduration: keyword 20.11.0-r1 for ~arm64-macos dev-python/lark: keyword 1.1.5 for ~arm64-macos dev-python/pkgconfig: keyword 1.5.5-r1 for ~arm64-macos dev-python/poetry-core: keyword 1.6.1 for ~arm64-macos dev-python/pyrsistent: keyword 0.19.3 for ~arm64-macos dev-python/rfc3339-validator: keyword 0.1.4-r1 for ~arm64-macos dev-python/rfc3986-validator: keyword 0.1.1-r1 for ~arm64-macos dev-python/rfc3987: keyword 1.3.8-r2 for ~arm64-macos dev-python/strict-rfc3339: keyword 0.7-r2 for ~arm64-macos dev-python/webcolors: keyword 1.13 for ~arm64-macos dev-python/uri_template: keyword 1.3.0 for ~arm64-macos dev-python/jsonpointer: keyword 2.4 for ~arm64-macos sci-libs/hdf5: keyword 1.14.1 for ~arm64-macos Reported-by: Jiajie Chen <jiegec@qq.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: remove unused patchesMichael Mair-Keimberger2023-07-082-277/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/31800 Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
* sci-libs/hdf5: keyword 1.14.1 for ~x64-macosBenda Xu2023-07-081-1/+1
| | | | Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/openblas: drop 0.3.18, 0.3.19, 0.3.20, 0.3.21Michael Orlitzky2023-07-065-798/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: add 0.3.23Michael Orlitzky2023-07-063-0/+237
| | | | | | | | | | | All this really needed was a rebase of the shared-lib patch. The loong arch patch still applies, albeit with fuzz. The strict-aliasing warnings from bug 862909 also seem gone, probably as part of the underlying lapack upgrade. Closes: https://bugs.gentoo.org/862909 Closes: https://bugs.gentoo.org/905277 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/rocFFT: drop myself as a maintainerCraig Andrews2023-07-051-4/+0
| | | | Signed-off-by: Craig Andrews <candrews@gentoo.org>
* sci-libs/rocPRIM: drop myself as a maintainerCraig Andrews2023-07-051-4/+0
| | | | Signed-off-by: Craig Andrews <candrews@gentoo.org>
* sci-libs/rocRAND: drop myself as a maintainerCraig Andrews2023-07-051-4/+0
| | | | Signed-off-by: Craig Andrews <candrews@gentoo.org>
* sci-libs/rocSPARSE: drop myself as a maintainerCraig Andrews2023-07-051-4/+0
| | | | Signed-off-by: Craig Andrews <candrews@gentoo.org>
* sci-libs/rocThrust: drop myself as a maintainerCraig Andrews2023-07-051-4/+0
| | | | Signed-off-by: Craig Andrews <candrews@gentoo.org>
* sci-libs/arpack: Keyword 3.8.0 alpha, #909358Matoro Mahri2023-07-051-1/+1
| | | | | Signed-off-by: Matoro Mahri <matoro@users.noreply.github.com> Signed-off-by: Viorel Munteanu <ceamac@gentoo.org>
* sci-libs/vtk: add 9.2.6Paul Zander2023-06-282-0/+752
| | | | | | Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/31487 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: reduce required memory for cuda compilationPaul Zander2023-06-281-1/+1
| | | | | | | | | | | | Prior logic assumes infinite parallel nvcc calls, while real-life testing shows a max of 4. This adds crude logic to require no more memory then needed for 4 parallel calls. Bug: https://bugs.gentoo.org/901241 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: add 3.12.0Sam James2023-06-272-0/+47
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/tensorflow: drop 2.10.0David Seifert2023-06-272-435/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/tensorflow-estimator: drop 2.10David Seifert2023-06-272-76/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/bliss: remove unused patchesMichael Mair-Keimberger2023-06-265-710/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/31627 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/bliss: drop 0.73-r2Michael Orlitzky2023-06-252-50/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/trilinos: add 14.2.0Matthias Maier2023-06-212-0/+258
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/linux-gpib-modules: also set KV_OUT_DIR module makeargAndrew Ammerlaan2023-06-211-0/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/linux-gpib-modules: use MODULES_MAKEARGS for emakeAndrew Ammerlaan2023-06-211-12/+4
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/p4est: remove unused patchMichael Mair-Keimberger2023-06-211-44/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/31555 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/libsc: remove unused patchMichael Mair-Keimberger2023-06-211-44/+0
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/linux-gpib-modules: migrate to linux-mod-r1.eclassAndrew Ammerlaan2023-06-211-0/+67
| | | | | | | | | | | | | Upstream has one target for all modules, this doesn't really work with linux-mod(-r1) src_compile so we keep the workaround that was already in the ebuild. Now using MODULES_KERNEL_MIN to check the kernel version, got rid of the custom solution in the ebuild. Call modules_post_process to strip, compress and sign the modules Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ginkgo: fix compilation with clang and libc++, avoid automagic depsMatthias Maier2023-06-193-0/+41
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/p4est: QA: quote variableMatthias Maier2023-06-191-1/+1
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/p4est: QA: fix install locations, EAPI bumpMatthias Maier2023-06-192-4/+49
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libsc: QA: fix install locations, EAPI bumpMatthias Maier2023-06-192-4/+36
| | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/cholmod: revert "sci-libs/cholmod: drop 3.0.13"Michael Orlitzky2023-06-192-0/+69
| | | | | | | | | | | | | | | This reverts commit 1f96092b44d5d5ccc9d703328630366f33b305dc. The stable sci-libs/suitesparse-5.4.0 has, RDEPEND=" ... ~sci-libs/cholmod-3.0.13[cuda?,doc?,partition?,lapack?] which won't accept the stable cholmod-3.0.14 that I thought could replace 3.0.13. Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/cholmod: drop 3.0.13Michael Orlitzky2023-06-192-69/+0
| | | | Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/spqr: revbump 2.0.9 for RDEPEND change.Michael Orlitzky2023-06-191-0/+0
| | | | | | In 24ba69fb we added an upper bound on a version in RDEPEND. Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/umfpack: Keep only one reliable testFrançois Bissey2023-06-191-11/+3
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/klu: add missing die statementFrançois Bissey2023-06-191-1/+1
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/cxsparse: add requested improvements from reviewFrançois Bissey2023-06-191-1/+1
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/ldl: more improvements from reviewFrançois Bissey2023-06-191-1/+1
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/ccolamd: add requested improvements from reviewFrançois Bissey2023-06-191-2/+2
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/colamd: add requested improvements from reviewFrançois Bissey2023-06-191-2/+2
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/umfpack: add requested improvements from reviewFrançois Bissey2023-06-191-2/+2
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/ldl: add requested improvements from reviewFrançois Bissey2023-06-191-2/+2
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/camd: add requested improvement from reviewFrançois Bissey2023-06-191-2/+2
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/amd: add requested improvements from reviewFrançois Bissey2023-06-191-2/+2
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/suitesparseconfig: BDEP on virtual/blas, checked at configuration.François Bissey2023-06-191-0/+3
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/spqr: restrict dependencies to suitable cholmod in 2.0.9François Bissey2023-06-191-1/+1
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/spqr: keyword 3.0.3 for ~loong, ~riscvFrançois Bissey2023-06-191-1/+1
| | | | | Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>