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* sci-libs/brial: x86 stable wrt bug #717386Agostino Sarubbo2020-04-141-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/brial: amd64 stable wrt bug #717386Agostino Sarubbo2020-04-141-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/m4ri: remove "unused" m4ri-20140914.ebuild.Michael Orlitzky2020-04-132-53/+0
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/spqr: drop ia64 keywordsSergei Trofimovich2020-04-131-2/+2
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/umfpack: propagate ~ia64 keywordSergei Trofimovich2020-04-131-1/+1
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
* sci-libs/proj: Security cleanup (drop 4.9.2 and 5.2.0)Andreas Sturmlechner2020-04-133-101/+0
| | | | | | | | Bug: https://bugs.gentoo.org/622916 Bug: https://bugs.gentoo.org/623164 Bug: https://bugs.gentoo.org/623640 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ogdi: Drop 3.2.0-r1Andreas Sturmlechner2020-04-138-640/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/cddlib: remove old "unused" versions and files.Michael Orlitzky2020-04-137-466/+0
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/cddlib: x86 stable wrt bug #716360Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/ogdi: x86 stable wrt bug #716928Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/iml: x86 stable wrt bug #717272Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: Drop 2.4.1-r1 and 2.4.3Andreas Sturmlechner2020-04-1310-1064/+0
| | | | | | Bug: https://bugs.gentoo.org/699838 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/iml: amd64 stable wrt bug #717272Agostino Sarubbo2020-04-131-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/iml: use HTTPS and drop RESTRICT=mirror.Michael Orlitzky2020-04-121-5/+3
| | | | | | | | | | | The HOMEPAGE and SRC_URI redirect to HTTPS anyway, so let's use it right off the bat. And RESTRICT=mirror doesn't seem needed after perusing the source. Since this ebuild was imported from an overlay, I feel relatively confident that I'm not doing anything wrong by removing it. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/ogdi: amd64 stable wrt bug #716928Agostino Sarubbo2020-04-121-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/ogdi: ppc64 stable wrt bug #716928Agostino Sarubbo2020-04-111-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/ogdi: ppc stable wrt bug #716928Agostino Sarubbo2020-04-111-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/gdal: arm64 stable (bug #699838)Mart Raudsepp2020-04-111-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/ogdi: arm64 stable (bug #716928)Mart Raudsepp2020-04-101-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/umfpack: fix build with USE=docBernd Waibel2020-04-101-0/+5
| | | | | | | | | Add a src_compile() function needed to build pkfonts, if USE=doc is enabled. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ogdi: 4.1.0 version bumpAndreas Sturmlechner2020-04-103-0/+85
| | | | | | | Bug: https://bugs.gentoo.org/699838 Closes: https://bugs.gentoo.org/706190 Package-Manager: Portage-2.3.98, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/m4ri: New release with all patches included.François Bissey2020-04-102-0/+47
| | | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: François René Pierre Bissey <frp.bissey@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15262 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/libgeotiff: Drop 1.4.1-r1Andreas Sturmlechner2020-04-102-65/+0
| | | | | Package-Manager: Portage-2.3.98, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/libgeotiff: arm64 stable (bug #706442)Mart Raudsepp2020-04-101-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/ceres-solver: fix CI issuesBernd Waibel2020-04-091-8/+8
| | | | | | | | | - address MissingUseDepDefault and DeprecatedInsinto issues from pkgcheck - remove slot and subslot operator on dependencies without slots Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/ceres-solver: fix CI issueBernd Waibel2020-04-091-7/+7
| | | | | | | | | | - address the MissingUseDepDefault issue form pkgcheck - remove slot and subslot operators on deps without slots Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15204 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/cddlib: ppc stable wrt bug #716360Agostino Sarubbo2020-04-081-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/scikits_learn: bug fixAndrew Ammerlaan2020-04-071-2/+1
| | | | | | | | | | fixes missing IUSE="examples" bug Closes: https://bugs.gentoo.org/716016 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net> Closes: https://github.com/gentoo/gentoo/pull/15215 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/cddlib: amd64 stable wrt bug #716360Agostino Sarubbo2020-04-071-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* Revert "sci-libs/adolc: drop old"Matthias Maier2020-04-063-0/+63
| | | | | | This reverts commit c124472bf2e70c44ddcb5f4bdbe67ae16777c193. Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/tensorflow-estimator: add rules_cc distfile for bazel 2.0Jason Zaman2020-04-073-2/+8
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/tensorflow: replace python_export with python_get_sitedirJason Zaman2020-04-074-20/+12
| | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/adolc: drop oldMatthias Maier2020-04-063-63/+0
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/adolc: version bump to 2.7.2Matthias Maier2020-04-062-0/+62
| | | | | | | Upstream has released a new version after 3 years. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/adolc: live ebuild: update repository, EAPI 7Matthias Maier2020-04-061-8/+6
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/libgeotiff: Fix tests with >=sci-libs/proj-6.2Andreas Sturmlechner2020-04-062-0/+59
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: Drop 3.7.2Andreas Sturmlechner2020-04-053-76/+0
| | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/geos: arm64 stable (bug #707516)Mart Raudsepp2020-04-051-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>
* sci-libs/vtk: Fix wrong installation path for libQVTKWidgetPlugin.soRafael Palomar2020-04-051-1/+1
| | | | | | | | | | This fixes the wrong installation path of libQVTKWidgetPlugin.so. From /usr/usr/... --> /usr/... Closes: https://bugs.gentoo.org/646422 Signed-off-by: Rafael Palomar Ávalos <rafael.palomar@rr-research.no> Closes: https://github.com/gentoo/gentoo/pull/15218 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix installation path for CMake filesRafael Palomar2020-04-051-0/+1
| | | | | | | | | | | | | On amd64, installation will drop files in /usr/lib64 except for CMake files which will be installed on /usr/lib. This fixes the installation path for the CMake files (/usr/lib64). Revision bump vtk-8.1.0-r4 --> vtk-8.1.0-r5 Signed-off-by: Rafael Palomar Ávalos <rafael.palomar@rr-research.no> Closes: https://github.com/gentoo/gentoo/pull/15213 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/suitesparse: new version 5.4.0.Michael Orlitzky2020-04-042-4/+42
| | | | | | | | | | | | | | | | | All of the individual suitesparse components have been updated, but I didn't realize there was a metapackage. And the 4.x versions of the metapackage have incorrect dependencies that are trying to pull in the components that belong to suitesparse-5.4.0. This is producing some confusing errors. This commit adds a new version of the metapackage with correct dependencies (tied to the versions of the components that ship with suitesparse-5.4.0), and should let ~arch users upgrade everything after switching from USE=metis to USE=partition. At some later point, we can prune the 4.x metapackage and components and be dont with that. Bug: https://bugs.gentoo.org/711610 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* */*: Drop stable ia64 keywordsMatt Turner2020-04-0322-22/+22
| | | | Signed-off-by: Matt Turner <mattst88@gentoo.org>
* sci-libs/fflas-ffpack: new package for finite-field linear algebra.Michael Orlitzky2020-04-034-0/+190
| | | | | | | | | | | | | | | | | | | | | | | This is a straightforward import of the latest fflas-ffpack-2.4.3.ebuild that François Bissey has been maintaining in the sage-on-gentoo overlay, with only a few minor changes: * I added a "+" to the LICENSE to match the upstream LGPL-2.1+. * I switched the openmp check to use tc-check-openmp() conditionally on the MERGE_TYPE variable. * Added BDEPEND="virtual/pkgconfig" since we patch in a call to PKG_CHECK_MODULES. I also removed a warning about build failures with USE=openmp. From what I can tell, this stems from an older report (upstream Github issue 48) using gcc-4.9.x that was never fully debugged. If the problems persist, we can revisit that report, or just mask the flag. Closes: https://bugs.gentoo.org/show_bug.cgi?id=715678 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/scikits_learn-0.22.2_p1: Version bumpPatrick McLean2020-04-022-0/+81
| | | | | | Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/openlibm: version bump to 0.7.0Jeffrey Lin2020-04-022-0/+24
| | | | | Signed-off-by: Jeffrey Lin <jeffrey@icurse.nl> Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/scikits-0.1-r2: add python3_8Patrick McLean2020-04-021-1/+1
| | | | | | Copyright: Sony Interactive Entertainment Inc. Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Patrick McLean <chutzpah@gentoo.org>
* sci-libs/opencascade: drop oldBernd Waibel2020-04-016-227/+0
| | | | | | | Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/15140 Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/opencascade: fix unused cmake variableBernd Waibel2020-04-011-2/+7
| | | | | | | Closes: https://bugs.gentoo.org/710694 Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: Bernd Waibel <waebbl@gmail.com> Signed-off-by: Joonas Niilola <juippis@gentoo.org>
* sci-libs/geos: arm stable wrt bug #707516Agostino Sarubbo2020-03-311-1/+1
| | | | | | Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="arm" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/proj: arm64 stable (bug #706146)Mart Raudsepp2020-03-291-1/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mart Raudsepp <leio@gentoo.org>