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* sci-libs/armadillo: drop 10.7.1Andreas K. Hüttel2023-04-072-151/+0
| | | | Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/caffe2: depends on a new XNNPACKAlfredo Tupone2023-04-061-1/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/htslib: drop 1.16David Seifert2023-04-062-53/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/XNNPACK: add 2022.12.22Alfredo Tupone2023-04-062-0/+85
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/volk: EAPI 7->8, add python 3.11Rick Farina2023-04-051-2/+2
| | | | | Closes: https://bugs.gentoo.org/897232 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/pytorch: add 2.0.0Alfredo Tupone2023-04-054-0/+100
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/caffe2: add 2.0.0Alfredo Tupone2023-04-053-0/+374
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/onnx: add 1.13.1Alfredo Tupone2023-04-042-0/+31
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/armadillo: add 12.0.1Andreas K. Hüttel2023-04-023-0/+169
| | | | Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/pastix: Stabilize 6.0.3 arm64, #899448Arthur Zamarin2023-04-011-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/scotch: Stabilize 7.0.1-r1 arm64, #899454Sam James2023-04-011-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 x86, #886889Arthur Zamarin2023-03-311-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 ppc, #886889Arthur Zamarin2023-03-311-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/rocBLAS: adapt for msgpack-cxx-6.0.0Marek Szuba2023-03-302-2/+2
| | | | Signed-off-by: Marek Szuba <marecki@gentoo.org>
* sci-libs/hdf5: Stabilize 1.12.2-r5 arm, #899460Arthur Zamarin2023-03-301-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/htslib: add 1.17David Seifert2023-03-302-0/+53
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ignition-common: fix build with ffmpeg6Alexis Ballier2023-03-292-2/+45
| | | | Signed-off-by: Alexis Ballier <aballier@gentoo.org>
* sci-libs/caffe2: avoid the use of MKLAlfredo Tupone2023-03-261-0/+1
| | | | Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/rtree: Use pypi.eclassMichał Górny2023-03-251-6/+3
| | | | | Closes: https://github.com/gentoo/gentoo/pull/30329 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/keras-preprocessing: Use pypi.eclassMichał Górny2023-03-251-4/+3
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/pytorch: drop building an empty .soAlfredo Tupone2023-03-242-0/+16
| | | | | Closes: https://bugs.gentoo.org/902727 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/symengine: add 0.10.1, drop 0.10.0Sam James2023-03-242-1/+1
| | | | | | 0.10.0 was a short-lived release. 0.10.1 has very fixes on top. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/symengine: add 0.10.0Sam James2023-03-222-0/+104
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/nlopt: Fortran is only needed for testsViolet Purcell2023-03-192-0/+2
| | | | | | Signed-off-by: Violet Purcell <vimproved@inventati.org> Closes: https://github.com/gentoo/gentoo/pull/30201 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Don't include ROOT in directory of eselect entriesJames Le Cuirot2023-03-181-2/+2
| | | | | | ROOT is not applicable at runtime, so only the EPREFIX should be present. Signed-off-by: James Le Cuirot <chewi@gentoo.org>
* sci-libs/lapack: Fix cross-compiling by disabling Fortran compiler testsJames Le Cuirot2023-03-181-0/+3
| | | | | | | Upstream has already decided to disable these tests by default in the next release for this and other reasons. Signed-off-by: James Le Cuirot <chewi@gentoo.org>
* sci-libs/caffe2: sci-libs/caffe2-1.13.1-r4 fails during install - rm: cannot ↵Larry D. Pyeatt2023-03-171-1/+1
| | | | | | | | | remove '/dev/shm/portage/sci-libs/caffe2-1.13.1-r4/image/var/tmp': No such file or directory Closes: https://bugs.gentoo.org/901967 Signed-off-by: Larry D. Pyeatt <larry.pyeatt@sdsmt.edu> Closes: https://github.com/gentoo/gentoo/pull/30187 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/scikit-optimize: Use pypi.eclassMichał Górny2023-03-171-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/dmlc-core: add 0.5Peter Levine2023-03-172-0/+106
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - add cpu_flags_x86_sse2 to IUSE It's true it only adds an -m flag to CXXFLAGS but so do most uses of CPU_FLAGS_X86. Also, remove automagic from CMakeLists.txt and pass -DSUPPORT_MSSE2 explicitly - remove patch Appears to be no longer needed. - fix dependencies Make gtest a proper bdep. The presence of texlive-fontutils appears irrelevant as the generated docs compare the same. curl is only needed for s3. - fix testing Portage doesn't set LD_LIBRARY_PATH resulting in a leading colon when used in LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${BUILD_DIR}". It builds fine with just -L\"${BUILD_DIR}\" and testing runs fine with just LD_LIBRARY_PATH="${BUILD_DIR}". It doesn't appear to need tc-export CXX to find the correct compiler. GTEST_LIB needs to be changed to the correct libdir. Otherwise it passes -L/lib/ triggering it to build in x86 mode and fail at linking stage. Alter GTEST_INC also for good measure. Pass -DGOOGLE_TEST for ctest testing, while also keeping non-ctest tests. Pass USE_CXX14_IF_AVAILABLE to cmake and change -std=c++11 to -std=c++14 in the Makefile to support the latest gtest. - use emake to build docs and tests in src_compile `emake test` is more appropriate in src_compile. And `emake doxygen` works fine to generate docs. - add little-endian tests Pass DMLC_UNIT_TEST_LITTLE_ENDIAN for a few more tests. Closes: https://bugs.gentoo.org/894038 Closes: https://github.com/gentoo/gentoo/pull/29572 Signed-off-by: Peter Levine <plevine457@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/netcdf: remove unused patchMichael Mair-Keimberger2023-03-171-46/+0
| | | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Closes: https://github.com/gentoo/gentoo/pull/30157 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/geos: add 3.11.2Sam James2023-03-173-0/+89
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 ppc64, #886889Arthur Zamarin2023-03-161-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/netcdf: Stabilize 4.9.2 amd64, #886889Sam James2023-03-151-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: drop 4.9.0, 4.9.1Sam James2023-03-153-148/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-fortran: drop 4.5.3Sam James2023-03-152-49/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: drop 4.3.0Sam James2023-03-152-30/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-fortran: use release tarballSam James2023-03-152-0/+41
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf-cxx: EAPI 8, use release tarballSam James2023-03-152-0/+32
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/netcdf: add 4.9.2Sam James2023-03-152-0/+75
| | | | | | | | | - Drop no strict aliasing workaround as fixes landed in 4.9.2 - Force serial tests again, the fixes in 4.9.1 weren't enough - Unconditionally build tools, as they're needed for tests + have no extra deps. Bug: https://bugs.gentoo.org/621486 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: add 3.6.3Sam James2023-03-132-0/+243
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: drop leftover unconditional BUILD_BENCHMARKSSam James2023-03-101-1/+0
| | | | | | | Closes: https://bugs.gentoo.org/900719 Bug: https://bugs.gentoo.org/900717 Fixes: 349ac256c44fb15a2fa5f13305179192a27a2e8f Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: set BUILD_BENCHMARKS conditionallySam James2023-03-101-1/+6
| | | | | | | Only defined for tests. Closes: https://bugs.gentoo.org/900717 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: add 9.2.0Sam James2023-03-102-0/+76
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: Stabilize 0.3.21-r1 amd64, #899456Sam James2023-03-071-2/+2
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pastix: Stabilize 6.0.3 amd64, #899448Sam James2023-03-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: Stabilize 2.6.0-r2 amd64, #899662Sam James2023-03-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/nlopt: Stabilize 2.7.1-r2 amd64, #899464Sam James2023-03-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/vtk: drop 9.0.3-r7, 9.1.0-r6, 9.2.2-r1Bernd Waibel2023-03-0712-2425/+0
| | | | | | | cleanup old Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/29932 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/coinor-mp: Keyword 1.8.4 riscv, #881389Yixun Lan2023-03-071-2/+2
| | | | Signed-off-by: Yixun Lan <dlan@gentoo.org>
* sci-libs/coinor-cbc: Keyword 2.10.5 riscv, #881389Yixun Lan2023-03-071-2/+2
| | | | Signed-off-by: Yixun Lan <dlan@gentoo.org>