From 76c0d35a1a7694289c8bf7fb3ebc19a159546e86 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Sun, 20 Jun 2021 22:03:49 +0200
Subject: sci-biology/bamtools: add 2.5.2

Bug: https://bugs.gentoo.org/787200
Signed-off-by: David Seifert <soap@gentoo.org>
---
 sci-biology/bamtools/Manifest              |  1 +
 sci-biology/bamtools/bamtools-2.5.2.ebuild | 33 ++++++++++++++++++++++++++++++
 2 files changed, 34 insertions(+)
 create mode 100644 sci-biology/bamtools/bamtools-2.5.2.ebuild

(limited to 'sci-biology/bamtools')

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index 424c08d51594..e6d9b12cb13e 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1 +1,2 @@
 DIST bamtools-2.5.1.tar.gz 549750 BLAKE2B c00b42b10e074e2c6b06f8bc9277a57080b9e99cd10080b1ad9052d59a3db353b33ecf6c30642d1651897396ea65e1e19cb15db0d58a89d4375fe34a8ec38e55 SHA512 f2c761c5bf923cf2f3db3dc54e40b4781307106b9177784f930aab619bd11fae3b343f3cfd232524580d39f0526a2a2f18efcf820fe4d9c951406bdb6b953afb
+DIST bamtools-2.5.2.tar.gz 245729 BLAKE2B 5034ea1ec16b205488e421461ed74d8a98eae87eb7fc061e5928ad15512497a5338c9dbacbde51009c940acd55c25fccc2f3be2840d2821a8755a2a0b0370944 SHA512 540a4664abfbd1304600c17d47424c312a46e4238b0f0868f4037ddcc54c4487424e3d7820153084b3b512be8a4603e3ec5377a73311a617061460de1bfe49ef
diff --git a/sci-biology/bamtools/bamtools-2.5.2.ebuild b/sci-biology/bamtools/bamtools-2.5.2.ebuild
new file mode 100644
index 000000000000..a809a651df64
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-2.5.2.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit cmake
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"
+else
+	SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+	KEYWORDS="~amd64 ~x86"
+fi
+
+LICENSE="MIT"
+SLOT="0/${PV}" # no stable ABI yet
+
+RDEPEND="
+	>=dev-libs/jsoncpp-1.8.0:=
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+src_prepare() {
+	# delete bundled libs, just to be safe
+	rm -rf src/third_party/{gtest-1.6.0,jsoncpp} || die
+
+	cmake_src_prepare
+}
-- 
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