{'description': {'en': 'The Gentoo Science Overlay is intended as a place to ' 'work\n' ' outside of the main portage tree on experimental ' 'ebuilds. Our aim is to\n' ' increase the rate of development of scientific ' 'packages for Gentoo, but\n' ' ebuilds in this repository are by their very ' 'nature more experimental. If\n' ' you wish to use them you should be willing to help ' 'test and report\n' ' bugs. For contribution read ' 'https://wiki.gentoo.org/wiki/Project:Science/Contributing\n' ' '}, 'feed': ['https://cgit.gentoo.org/proj/sci.git/atom/', 'https://github.com/gentoo-science/sci/commits/master.atom'], 'homepage': 'https://wiki.gentoo.org/wiki/Project:Science', 'name': 'science', 'owner': [{'email': 'sci@gentoo.org', 'name': 'sci', 'type': 'project'}], 'quality': 'experimental', 'source': [{'type': 'git', 'uri': 'https://anongit.gentoo.org/git/proj/sci.git'}, {'type': 'git', 'uri': 'git://anongit.gentoo.org/proj/sci.git'}, {'type': 'git', 'uri': 'git+ssh://git@git.gentoo.org/proj/sci.git'}, {'type': 'git', 'uri': 'https://github.com/gentoo-science/sci.git'}, {'type': 'git', 'uri': 'git://github.com/gentoo-science/sci.git'}, {'type': 'git', 'uri': 'git@github.com:gentoo-science/sci.git'}], 'status': 'official'} $ pmaint sync science *** syncing science warning: Pulling without specifying how to reconcile divergent branches is discouraged. You can squelch this message by running one of the following commands sometime before your next pull: git config pull.rebase false # merge (the default strategy) git config pull.rebase true # rebase git config pull.ff only # fast-forward only You can replace "git config" with "git config --global" to set a default preference for all repositories. You can also pass --rebase, --no-rebase, or --ff-only on the command line to override the configured default per invocation. From https://anongit.gentoo.org/git/proj/sci 000bf66a1..ed8933c21 master -> origin/master Updating 000bf66a1..ed8933c21 Fast-forward sci-biology/bedops/Manifest | 1 + sci-biology/bedops/bedops-2.4.26.ebuild | 23 ++++ .../files/bedops-2.4.26-respect-cxxflags.patch | 138 +++++++++++++++++++++ .../bowtie/bowtie-1.2.2_beta20190219.ebuild | 81 ++++++++++++ .../files/bowtie-1.2.2-_ContextLss-1.1-1.4.patch | 17 +++ .../files/bowtie-1.2.2-fix-Intel-compilation.patch | 32 +++++ .../files/bowtie-1.2.2-fix-isa-return-type.patch | 22 ++++ .../bowtie/files/bowtie-1.2.2-unbundle-seqan.patch | 14 +++ .../bowtie/files/bowtie-1.2.2-void2int.patch | 16 +++ 9 files changed, 344 insertions(+) create mode 100644 sci-biology/bedops/bedops-2.4.26.ebuild create mode 100644 sci-biology/bedops/files/bedops-2.4.26-respect-cxxflags.patch create mode 100644 sci-biology/bowtie/bowtie-1.2.2_beta20190219.ebuild create mode 100644 sci-biology/bowtie/files/bowtie-1.2.2-_ContextLss-1.1-1.4.patch create mode 100644 sci-biology/bowtie/files/bowtie-1.2.2-fix-Intel-compilation.patch create mode 100644 sci-biology/bowtie/files/bowtie-1.2.2-fix-isa-return-type.patch create mode 100644 sci-biology/bowtie/files/bowtie-1.2.2-unbundle-seqan.patch create mode 100644 sci-biology/bowtie/files/bowtie-1.2.2-void2int.patch *** synced science * Sync succeeded $ git log --format=%ci -1 $ git show -q --pretty=format:%G? HEAD $ pmaint regen --use-local-desc --pkg-desc-index -t 32 science * Cache regenerated successfully