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author | Jon Portnoy <avenj@gentoo.org> | 2003-05-07 18:47:43 +0000 |
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committer | Jon Portnoy <avenj@gentoo.org> | 2003-05-07 18:47:43 +0000 |
commit | 3ddf8a0e03d4a974d880ede9e0642389ae7dad8e (patch) | |
tree | 65bda30e6e8bf64b2902008bf21068e2831cc2fe /app-sci | |
parent | Initial import (diff) | |
download | gentoo-2-3ddf8a0e03d4a974d880ede9e0642389ae7dad8e.tar.gz gentoo-2-3ddf8a0e03d4a974d880ede9e0642389ae7dad8e.tar.bz2 gentoo-2-3ddf8a0e03d4a974d880ede9e0642389ae7dad8e.zip |
Initial import
Diffstat (limited to 'app-sci')
-rw-r--r-- | app-sci/hmmer/ChangeLog | 9 | ||||
-rw-r--r-- | app-sci/hmmer/Manifest | 3 | ||||
-rw-r--r-- | app-sci/hmmer/files/Makefile-hmmer-2.2g.patch | 33 | ||||
-rw-r--r-- | app-sci/hmmer/files/digest-hmmer-2.2g | 1 | ||||
-rw-r--r-- | app-sci/hmmer/hmmer-2.2g.ebuild | 44 |
5 files changed, 89 insertions, 1 deletions
diff --git a/app-sci/hmmer/ChangeLog b/app-sci/hmmer/ChangeLog new file mode 100644 index 000000000000..09de799cc615 --- /dev/null +++ b/app-sci/hmmer/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for app-sci/hmmer +# Copyright 2000-2003 Gentoo Technologies, Inc.; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/ChangeLog,v 1.1 2003/05/07 18:47:31 avenj Exp $ + +*hmmer-2.2g (07 May 2003) + + 07 May 2003; Jon Portnoy <avenj@gentoo.org> hmmer-2.2g.ebuild : + Initial import. Ebuild submitted by Steve Diener and Gontran Zepeda + in bug #20449. diff --git a/app-sci/hmmer/Manifest b/app-sci/hmmer/Manifest index a7b569269737..ef4da39ca6ac 100644 --- a/app-sci/hmmer/Manifest +++ b/app-sci/hmmer/Manifest @@ -1,3 +1,4 @@ -MD5 6eb341b123204ac248e065d923b5e4a7 hmmer-2.2g.ebuild 808 +MD5 a676c9096480978d032ed2b58efceabf hmmer-2.2g.ebuild 903 +MD5 89b013567d8503b76ba599f0e19707ba ChangeLog 387 MD5 bd33e448c26a59469256420a3b920600 files/digest-hmmer-2.2g 62 MD5 9fbc129db1a886510ff026fd89e131f1 files/Makefile-hmmer-2.2g.patch 1040 diff --git a/app-sci/hmmer/files/Makefile-hmmer-2.2g.patch b/app-sci/hmmer/files/Makefile-hmmer-2.2g.patch new file mode 100644 index 000000000000..fe9c8fdbcbfa --- /dev/null +++ b/app-sci/hmmer/files/Makefile-hmmer-2.2g.patch @@ -0,0 +1,33 @@ +--- Makefile.in.orig 2003-05-05 15:21:41.000000000 +0100 ++++ Makefile.in 2003-05-05 15:22:11.000000000 +0100 +@@ -84,6 +84,12 @@ + sindex\ + shuffle\ + sreformat ++SQUIDMANS = afetch\ ++ alistat\ ++ seqstat\ ++ sfetch\ ++ shuffle\ ++ sreformat + + # all: Compile everything (except the testsuite), + # and stick the supported programs in binaries/ +@@ -146,13 +152,14 @@ + for file in $(PROGS) $(SQUIDPROGS) $(PVMPROGS); do\ + cp binaries/$$file $(BINDIR)/;\ + done +- for file in hmmer $(PROGS) $(SQUIDPROGS); do\ ++ for file in hmmer $(PROGS); do\ + $(INSTMAN) documentation/man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\ ++ chmod 0644 $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\ + done +- for file in $(SQUIDPROGS); do\ ++ for file in $(SQUIDMANS); do\ + $(INSTMAN) squid/Man/$$file.man $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\ ++ chmod 0644 $(MANDIR)/man$(MANSUFFIX)/$$file.$(MANSUFFIX);\ + done +- + # "make clean" removes almost everything except configuration files + # and binaries. + clean: diff --git a/app-sci/hmmer/files/digest-hmmer-2.2g b/app-sci/hmmer/files/digest-hmmer-2.2g new file mode 100644 index 000000000000..78a5f3430c3f --- /dev/null +++ b/app-sci/hmmer/files/digest-hmmer-2.2g @@ -0,0 +1 @@ +MD5 d7def2007a0aaf2eafb9a96a07986b8c hmmer-2.2g.tar.gz 931569 diff --git a/app-sci/hmmer/hmmer-2.2g.ebuild b/app-sci/hmmer/hmmer-2.2g.ebuild new file mode 100644 index 000000000000..56ee3d5c2ae9 --- /dev/null +++ b/app-sci/hmmer/hmmer-2.2g.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2003 Gentoo Technologies, Inc. +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/hmmer/hmmer-2.2g.ebuild,v 1.1 2003/05/07 18:47:31 avenj Exp $ + +DESCRIPTION="HMMER - Biological sequence analysis with profile HMMs" +HOMEPAGE="http://hmmer.wustl.edu/" +SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/CURRENT/${P}.tar.gz" +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86" +IUSE="" +DEPEND="" + +S=${WORKDIR}/${P} + +src_unpack(){ + unpack ${A} + cd ${S} + epatch ${FILESDIR}/Makefile-${P}.patch +} + +src_compile() { + + ./configure \ + --host=${CHOST} \ + --prefix=${D}/usr \ + --mandir=${D}/usr/share/man || die "./configure failed" + + emake || die +} + +src_install() { + + dodir usr/bin + dodir usr/share/man/man1 + + einstall || die + + dodoc 00README COPYRIGHT INSTALL LICENSE NOTES Userguide.pdf + + # include the squid docs + dodoc squid/Docs/*.tex + +} |