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| author |   Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2010-09-17 20:43:01 +0000 |
|---|---|---|
| committer | Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> | 2010-09-17 20:43:01 +0000 |
| commit | b2ced2f6b7a22204364e3ff86a3c1063f5e5166a (patch) | |
| tree | 0f74970b793146996575a1735fd4a0b97c86be89 /sci-biology/biopython | |
| parent | Bumps to address IA32 syscall exploit. (diff) | |
| download | gentoo-2-b2ced2f6b7a22204364e3ff86a3c1063f5e5166a.tar.gz gentoo-2-b2ced2f6b7a22204364e3ff86a3c1063f5e5166a.tar.bz2 gentoo-2-b2ced2f6b7a22204364e3ff86a3c1063f5e5166a.zip | |
Version bump.
(Portage version: 2.2_rc83_p15/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/biopython')
| -rw-r--r-- | sci-biology/biopython/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/biopython/biopython-1.55.ebuild | 54 |
2 files changed, 61 insertions, 1 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog index 5b3546cbea16..a72ec464f973 100644 --- a/sci-biology/biopython/ChangeLog +++ b/sci-biology/biopython/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/biopython # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.46 2010/09/12 20:07:53 klausman Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.47 2010/09/17 20:43:00 arfrever Exp $ + +*biopython-1.55 (17 Sep 2010) + + 17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org> + +biopython-1.55.ebuild: + Version bump. 12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild: Stable on alpha, bug #327151 diff --git a/sci-biology/biopython/biopython-1.55.ebuild b/sci-biology/biopython/biopython-1.55.ebuild new file mode 100644 index 000000000000..7abdba5eb135 --- /dev/null +++ b/sci-biology/biopython/biopython-1.55.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.55.ebuild,v 1.1 2010/09/17 20:43:01 arfrever Exp $ + +EAPI="3" +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" +RESTRICT_PYTHON_ABIS="3.*" + +inherit distutils eutils + +DESCRIPTION="Biopython - Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org http://pypi.python.org/pypi/biopython" +SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ppc ~sparc ~x86" +IUSE="mysql postgres" + +RDEPEND="dev-python/numpy + >=dev-python/reportlab-2.0 + mysql? ( dev-python/mysql-python ) + postgres? ( dev-python/psycopg )" +DEPEND="${RDEPEND} + sys-devel/flex" + +PYTHON_CFLAGS=("2.* + -fno-strict-aliasing") + +DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1" +DOCS="CONTRIB DEPRECATED NEWS README" +PYTHON_MODNAME="Bio BioSQL" + +src_prepare() { + distutils_src_prepare + epatch "${FILESDIR}/${PN}-1.51-flex.patch" +} + +src_test() { + testing() { + cd Tests + PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py + } + python_execute_function --nonfatal -s testing +} + +src_install() { + distutils_src_install + + insinto /usr/share/doc/${PF} + doins -r Doc/* || die "Installation of documentation failed" + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed" +} |