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| author |   Olivier Fisette <ribosome@gentoo.org> | 2005-06-19 00:38:11 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2005-06-19 00:38:11 +0000 |
| commit | 31799db6074caef7953eefb0f32c07400cc16302 (patch) | |
| tree | 22ddbf5ad5bd764f3dcae9b32c0e7e5d785a4553 /sci-biology/cutg | |
| parent | bug 96369 (diff) | |
| download | gentoo-2-31799db6074caef7953eefb0f32c07400cc16302.tar.gz gentoo-2-31799db6074caef7953eefb0f32c07400cc16302.tar.bz2 gentoo-2-31799db6074caef7953eefb0f32c07400cc16302.zip | |
New version
(Portage version: 2.0.51.19)
Diffstat (limited to 'sci-biology/cutg')
| -rw-r--r-- | sci-biology/cutg/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/cutg/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/cutg/cutg-147.ebuild | 44 | ||||
| -rw-r--r-- | sci-biology/cutg/files/digest-cutg-147 | 1 |
4 files changed, 53 insertions, 1 deletions
diff --git a/sci-biology/cutg/ChangeLog b/sci-biology/cutg/ChangeLog index 2098089e26df..1c3ef6873eb6 100644 --- a/sci-biology/cutg/ChangeLog +++ b/sci-biology/cutg/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cutg # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.16 2005/06/18 23:16:06 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.17 2005/06/19 00:38:11 ribosome Exp $ + +*cutg-147 (19 Jun 2005) + + 19 Jun 2005; Olivier Fisette <ribosome@gentoo.org> +cutg-147.ebuild: + New version. 18 Jun 2005; Olivier Fisette <ribosome@gentoo.org> -cutg-144.ebuild: Removed obsolete version. diff --git a/sci-biology/cutg/Manifest b/sci-biology/cutg/Manifest index 9fb4ccf513f7..524f143937f0 100644 --- a/sci-biology/cutg/Manifest +++ b/sci-biology/cutg/Manifest @@ -1,6 +1,8 @@ MD5 218011b0693086b65af18f803aa313f9 cutg-146.ebuild 1169 MD5 954d02893953b8f9c904299f892979ce cutg-145.ebuild 1169 +MD5 cf0a21e0154f3f63cc51015fa0f16fd1 cutg-147.ebuild 1172 MD5 5d494ac80ce5c0f6f4e76673bccae61a ChangeLog 2697 MD5 d14f29edef39d8d89b39a5787c3d141c metadata.xml 594 MD5 9c6a185b26bf5647beb885860099151f files/digest-cutg-145 63 MD5 5de9ff1df8fe00fdf41b5b7c0db04fba files/digest-cutg-146 63 +MD5 83fa71b1c66f960bfccd8e17201c09de files/digest-cutg-147 63 diff --git a/sci-biology/cutg/cutg-147.ebuild b/sci-biology/cutg/cutg-147.ebuild new file mode 100644 index 000000000000..1e0387019461 --- /dev/null +++ b/sci-biology/cutg/cutg-147.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-147.ebuild,v 1.1 2005/06/19 00:38:11 ribosome Exp $ + +DESCRIPTION="Codon usage tables calculated from GenBank" +HOMEPAGE="http://www.kazusa.or.jp/codon/" +SRC_URI="ftp://ftp.kazusa.or.jp/pub/codon/current/compressed/CUTG.${PV}.tar.gz" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~ppc ~ppc-macos ~ppc64 ~x86" +IUSE="emboss minimal" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. + +DEPEND="emboss? ( sci-biology/emboss )" + +S=${WORKDIR} + +src_compile() { + if use emboss; then + mkdir CODONS + echo + einfo "Indexing CUTG for usage with EMBOSS." + EMBOSS_DATA=. cutgextract -auto -directory ${S} || die \ + "Indexing CUTG failed." + echo + fi +} + +src_install() { + if ! use minimal; then + mkdir -p ${D}/usr/share/${PN} + mv *.codon *.spsum ${D}/usr/share/${PN} + fi + dodoc README + if use emboss; then + mkdir -p ${D}/usr/share/EMBOSS/data/CODONS + cd CODONS + for file in *; do + mv ${file} ${D}/usr/share/EMBOSS/data/CODONS + done + fi +} diff --git a/sci-biology/cutg/files/digest-cutg-147 b/sci-biology/cutg/files/digest-cutg-147 new file mode 100644 index 000000000000..666d83858811 --- /dev/null +++ b/sci-biology/cutg/files/digest-cutg-147 @@ -0,0 +1 @@ +MD5 b2a7fd01f46cb72ad31b0129ed2dd54d CUTG.147.tar.gz 142239582 |