diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-04-07 23:32:18 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-04-07 23:32:18 +0000 |
| commit | 329de00f4f730d6fea723ccfa286e44535eec92d (patch) | |
| tree | 9f3da1be160f0e38414dcec2d15aa276399875ad /sci-biology/gatk | |
| parent | Dropping npm - now included in nodejs (diff) | |
| download | gentoo-2-329de00f4f730d6fea723ccfa286e44535eec92d.tar.gz gentoo-2-329de00f4f730d6fea723ccfa286e44535eec92d.tar.bz2 gentoo-2-329de00f4f730d6fea723ccfa286e44535eec92d.zip | |
Version bump, drop old
(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/gatk')
| -rw-r--r-- | sci-biology/gatk/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-1.3.ebuild | 44 | ||||
| -rw-r--r-- | sci-biology/gatk/gatk-1.5.ebuild (renamed from sci-biology/gatk/gatk-1.2.ebuild) | 6 |
3 files changed, 10 insertions, 48 deletions
diff --git a/sci-biology/gatk/ChangeLog b/sci-biology/gatk/ChangeLog index 4034d48873cf..29ce6b1a7b58 100644 --- a/sci-biology/gatk/ChangeLog +++ b/sci-biology/gatk/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/gatk # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.3 2012/01/29 22:10:21 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/ChangeLog,v 1.4 2012/04/07 23:32:18 weaver Exp $ + +*gatk-1.5 (07 Apr 2012) + + 07 Apr 2012; Andrey Kislyuk <weaver@gentoo.org> -gatk-1.2.ebuild, + -gatk-1.3.ebuild, +gatk-1.5.ebuild: + Version bump, drop old *gatk-1.4 (29 Jan 2012) diff --git a/sci-biology/gatk/gatk-1.3.ebuild b/sci-biology/gatk/gatk-1.3.ebuild deleted file mode 100644 index 43ae46e02d20..000000000000 --- a/sci-biology/gatk/gatk-1.3.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.3.ebuild,v 1.1 2011/12/26 05:40:50 weaver Exp $ - -EAPI=4 - -MY_HASH=9dec377 - -EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -#inherit java-pkg-2 java-ant-2 git -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="https://github.com/broadgsa/gatk/tarball/${PV} -> ${P}.tar.gz" - -LICENSE="as-is" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -COMMON_DEPS="" -DEPEND=">=virtual/jdk-1.6 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 - ${COMMON_DEPS}" - -S="${WORKDIR}/broadgsa-gatk-${MY_HASH}" - -src_prepare() { - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} diff --git a/sci-biology/gatk/gatk-1.2.ebuild b/sci-biology/gatk/gatk-1.5.ebuild index c15c610ed329..e1ee4da5d921 100644 --- a/sci-biology/gatk/gatk-1.2.ebuild +++ b/sci-biology/gatk/gatk-1.5.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2011 Gentoo Foundation +# Copyright 1999-2012 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.2.ebuild,v 1.1 2011/10/31 21:18:17 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/gatk/gatk-1.5.ebuild,v 1.1 2012/04/07 23:32:18 weaver Exp $ EAPI=4 -MY_HASH=885c33a +MY_HASH=c981d24 EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" |