Initial import.

(Portage version: 2.0.51.19)

1 files changed, 68 insertions, 0 deletions

diff --git a/sci-biology/wise/wise-2.2.0.ebuild b/sci-biology/wise/wise-2.2.0.ebuild
new file mode 100644
index 000000000000..33f8e3bc43c5
--- /dev/null
+++ b/sci-biology/wise/wise-2.2.0.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/wise/wise-2.2.0.ebuild,v 1.1 2005/03/06 17:11:21 ribosome Exp $
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Intelligent algorithms for DNA searches"
+LICENSE="BSD"
+HOMEPAGE="http://www.ebi.ac.uk/Wise2/"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/unix/${PN}2/${PN}${PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+
+RDEPEND="=sci-biology/hmmer-2.3.2-r1"
+
+DEPEND="${RDEPEND}
+	app-shells/tcsh
+	dev-lang/perl
+	virtual/tetex"
+
+S=${WORKDIR}/${PN}${PV}
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}/src
+#	if use threads; then
+#		append-flags "-DPTHREAD"
+#		sed -e "s/#EXTRALIBS = -lpthread/EXTRALIBS = -lpthread/" -i makefile || die
+#	fi
+	sed -e "s/CC = cc/CC = $(tc-getCC)/" \
+		-e "s/CFLAGS = -c -O/CFLAGS = -c ${CFLAGS}/" \
+		-i makefile || die
+	cd ${S}/docs
+	cat ${S}/src/models/*.tex ${S}/src/dynlibsrc/*.tex | perl gettex.pl > temp.tex
+	cat wise2api.tex temp.tex apiend.tex > api.tex
+	epatch ${FILESDIR}/${PN}-api.tex.patch
+}
+
+src_compile() {
+	cd src
+	make all || die
+	cd ${S}/docs
+	for i in api appendix dynamite wise2 wise3arch; do
+		latex ${i} || die
+		latex ${i} || die
+		dvips ${i}.dvi -o || die
+	done
+}
+
+src_install() {
+	dobin ${S}/src/bin/*
+	dolib ${S}/src/base/libwisebase.a
+	dolib ${S}/src/dynlibsrc/libdyna.a
+	dobin ${S}/src/dynlibsrc/testgendb
+	dolib ${S}/src/models/libmodel.a
+	insinto /usr/share/${PN}
+	doins -r ${S}/wisecfg
+	insinto /usr/share/doc/${PF}
+	doins ${S}/docs/*.ps
+	newenvd ${FILESDIR}/${PN}-env 24wise
+}
+
+src_test() {
+	cd ${S}/src
+	WISECONFIGDIR="${S}/wisecfg" make test || die
+}