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| author |   Justin Lecher <jlec@gentoo.org> | 2012-10-18 17:46:23 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2012-10-18 17:46:23 +0000 |
| commit | 27d7e8efa7d139ce624a5b0db687d5020b067554 (patch) | |
| tree | 54a50d7f6bd4e73973aed390127330f20cb1a550 /sci-biology | |
| parent | x11-terms/terminator: Add new USE=libnotify to make notification support opti... (diff) | |
| download | gentoo-2-27d7e8efa7d139ce624a5b0db687d5020b067554.tar.gz gentoo-2-27d7e8efa7d139ce624a5b0db687d5020b067554.tar.bz2 gentoo-2-27d7e8efa7d139ce624a5b0db687d5020b067554.zip | |
sci-biology/glimmerhmm: Drop old
(Portage version: 2.2.0_alpha141/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/glimmerhmm/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild | 48 |
2 files changed, 4 insertions, 49 deletions
diff --git a/sci-biology/glimmerhmm/ChangeLog b/sci-biology/glimmerhmm/ChangeLog index 03c829bf2cc6..e5767d189265 100644 --- a/sci-biology/glimmerhmm/ChangeLog +++ b/sci-biology/glimmerhmm/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/glimmerhmm # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/ChangeLog,v 1.7 2012/10/17 03:47:49 phajdan.jr Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/ChangeLog,v 1.8 2012/10/18 17:46:23 jlec Exp $ + + 18 Oct 2012; Justin Lecher <jlec@gentoo.org> -glimmerhmm-3.0.1.ebuild: + Drop old 17 Oct 2012; Pawel Hajdan jr <phajdan.jr@gentoo.org> glimmerhmm-3.0.1-r1.ebuild: diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild deleted file mode 100644 index 600a0a39b9bd..000000000000 --- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild,v 1.6 2011/06/20 08:32:26 jlec Exp $ - -inherit toolchain-funcs - -MY_P=GlimmerHMM - -DESCRIPTION="An eukaryotic gene finding system from TIGR" -HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/" -SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="amd64 x86" - -src_unpack() { - unpack ${A} - mv GlimmerHMM ${P} - sed \ - -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ - -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \ - -i "${S}/train/trainGlimmerHMM" || die - sed \ - -e 's/^CFLAGS[ ]*=.*//' \ - -e 's/C *=.*/C='$(tc-getCC)'/' \ - -e 's/CC *=.*/CC='$(tc-getCXX)'/' \ - -i "${S}"/*/makefile || die -} - -src_compile() { - emake -C "${S}/sources" || die "emake failed in sources" - emake -C "${S}/train" || die "emake failed in train" -} - -src_install() { - dobin sources/glimmerhmm train/trainGlimmerHMM || die - - insinto /usr/share/${PN}/lib - doins train/*.pm || die - insinto /usr/share/${PN}/models - doins -r trained_dir/* || die - exeinto /usr/share/${PN}/training_utils - doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} || die - - dodoc README.first train/readme.train -} |