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| author |   Kacper Kowalik <xarthisius@gentoo.org> | 2010-09-07 11:51:10 +0000 |
|---|---|---|
| committer | Kacper Kowalik <xarthisius@gentoo.org> | 2010-09-07 11:51:10 +0000 |
| commit | 475328b140167e656f5a309eeb50113d2622ec63 (patch) | |
| tree | a616e02b408c2f07ef5de2d251733488f094cb48 /sci-biology | |
| parent | Silence repoman. (diff) | |
| download | gentoo-2-475328b140167e656f5a309eeb50113d2622ec63.tar.gz gentoo-2-475328b140167e656f5a309eeb50113d2622ec63.tar.bz2 gentoo-2-475328b140167e656f5a309eeb50113d2622ec63.zip | |
Respect LDFLAGS wrt bug 336348. Thanks to Diego for the report. Add proper pthread support, drop empty DEPENDs. Drop old.
(Portage version: 2.2_rc73/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bwa/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/bwa/bwa-0.5.0-r1.ebuild (renamed from sci-biology/bwa/bwa-0.4.6.ebuild) | 19 |
2 files changed, 20 insertions, 8 deletions
diff --git a/sci-biology/bwa/ChangeLog b/sci-biology/bwa/ChangeLog index ca7cc0fd9863..e470ca78bb48 100644 --- a/sci-biology/bwa/ChangeLog +++ b/sci-biology/bwa/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/bwa # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.7 2010/05/23 21:15:12 pacho Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/ChangeLog,v 1.8 2010/09/07 11:51:10 xarthisius Exp $ + +*bwa-0.5.0-r1 (07 Sep 2010) + + 07 Sep 2010; Kacper Kowalik <xarthisius@gentoo.org> -bwa-0.4.6.ebuild, + +bwa-0.5.0-r1.ebuild: + Respect LDFLAGS wrt bug 336348. Thanks to Diego for the report. Add proper + pthread support, drop empty DEPENDs. Drop old. 23 May 2010; Pacho Ramos <pacho@gentoo.org> bwa-0.5.0.ebuild: stable amd64, bug 314907 diff --git a/sci-biology/bwa/bwa-0.4.6.ebuild b/sci-biology/bwa/bwa-0.5.0-r1.ebuild index 3ec0d2e9d1c5..1cf519c13e64 100644 --- a/sci-biology/bwa/bwa-0.4.6.ebuild +++ b/sci-biology/bwa/bwa-0.5.0-r1.ebuild @@ -1,9 +1,11 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.4.6.ebuild,v 1.3 2009/06/12 00:52:47 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.5.0-r1.ebuild,v 1.1 2010/09/07 11:51:10 xarthisius Exp $ EAPI=2 +inherit flag-o-matic toolchain-funcs + DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner" HOMEPAGE="http://maq.sourceforge.net/" SRC_URI="mirror://sourceforge/maq/${P}.tar.bz2" @@ -13,11 +15,14 @@ SLOT="0" IUSE="" KEYWORDS="~amd64 ~x86" -DEPEND="" -RDEPEND="" - src_prepare() { - sed -e "/^CFLAGS.*/d" -i "${S}"/Makefile + sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \ + -i "${S}"/Makefile || die #336348 + append-flags -pthread +} + +src_compile() { + emake -e CC="$(tc-getCC)" || die } src_install() { @@ -25,5 +30,5 @@ src_install() { doman bwa.1 || die exeinto /usr/share/${PN} doexe solid2fastq.pl || die - dodoc ChangeLog NEWS + dodoc ChangeLog NEWS || die } |