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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2012-02-05 03:56:55 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2012-02-05 03:56:55 +0000 |
| commit | 7598721bcd6fc930c96e52e3f163f175934fac1e (patch) | |
| tree | 0aecd4dfdc8005c473c55f7b0878fc118b109b35 /sci-biology | |
| parent | Drop duplicate multilib (oops). (diff) | |
| download | gentoo-2-7598721bcd6fc930c96e52e3f163f175934fac1e.tar.gz gentoo-2-7598721bcd6fc930c96e52e3f163f175934fac1e.tar.bz2 gentoo-2-7598721bcd6fc930c96e52e3f163f175934fac1e.zip | |
New package, ebuild written by me
(Portage version: 2.2.0_alpha74/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/cufflinks/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/cufflinks/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/cufflinks/cufflinks-1.3.0.ebuild | 37 | ||||
| -rw-r--r-- | sci-biology/cufflinks/metadata.xml | 9 |
4 files changed, 60 insertions, 0 deletions
diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog new file mode 100644 index 000000000000..cb1ed076a7d6 --- /dev/null +++ b/sci-biology/cufflinks/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/cufflinks +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.1 2012/02/05 03:56:55 weaver Exp $ + +*cufflinks-1.3.0 (05 Feb 2012) + + 05 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +cufflinks-1.3.0.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/cufflinks/Manifest b/sci-biology/cufflinks/Manifest new file mode 100644 index 000000000000..3189bab01e1b --- /dev/null +++ b/sci-biology/cufflinks/Manifest @@ -0,0 +1,4 @@ +DIST cufflinks-1.3.0.tar.gz 676660 RMD160 b497d7cfc12453024ac02da24a9eef8987ab3cab SHA1 fa93a7a33f0649793ec1d185cb7043fd0dc2018b SHA256 c1e194e30e6ba2e1cbbd35e5f92be59f9fdef95a12079b3141790efbbdbdfd86 +EBUILD cufflinks-1.3.0.ebuild 868 RMD160 1b4a437e6dafc811189419579c224d6f0c6ee957 SHA1 8339db10da39bebe7362241736d96a4547f6e08e SHA256 ccaf6c093fd0e0a8143969a8072d9deaf9229e8966d683b88fe796c73e741d7e +MISC ChangeLog 283 RMD160 374872f8ad14f9822fbd10f3c20762c29f993a8b SHA1 dd11b1b5698d3c46ddd6234c94e8e8bfd6583925 SHA256 3b766f518b852692cb7c589f76db2e15f115d070fe4479c4130319c456c29b7d +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/cufflinks/cufflinks-1.3.0.ebuild b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild new file mode 100644 index 000000000000..022929e39c30 --- /dev/null +++ b/sci-biology/cufflinks/cufflinks-1.3.0.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0.ebuild,v 1.1 2012/02/05 03:56:55 weaver Exp $ + +EAPI=4 + +inherit flag-o-matic autotools + +DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" +HOMEPAGE="http://cufflinks.cbcb.umd.edu/" +SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="sci-biology/samtools + dev-libs/boost:1.46" +RDEPEND="${DEPEND}" + +MAKEOPTS="${MAKEOPTS} -j1" + +src_prepare() { + filter-ldflags -Wl,--as-needed + eautoreconf +} + +src_configure() { + econf \ + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/boost-1_46" || die +} + +src_install() { + emake DESTDIR="${D}" install || die + dodoc README AUTHORS +} diff --git a/sci-biology/cufflinks/metadata.xml b/sci-biology/cufflinks/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/cufflinks/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |