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authorAndrey Kislyuk <weaver@gentoo.org>2008-05-23 17:28:35 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2008-05-23 17:28:35 +0000
commite397e649c95752c35237981b6750095fbf33359b (patch)
treed00d66ba5daa8509775dfab9b4076e38bf6f44c0 /sci-biology
parentVersion bump (diff)
downloadgentoo-2-e397e649c95752c35237981b6750095fbf33359b.tar.gz
gentoo-2-e397e649c95752c35237981b6750095fbf33359b.tar.bz2
gentoo-2-e397e649c95752c35237981b6750095fbf33359b.zip
New package from sunrise, bug 135307
(Portage version: 2.1.4.4)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/blat/ChangeLog9
-rw-r--r--sci-biology/blat/Manifest4
-rw-r--r--sci-biology/blat/blat-34.ebuild34
-rw-r--r--sci-biology/blat/metadata.xml9
4 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/blat/ChangeLog b/sci-biology/blat/ChangeLog
new file mode 100644
index 000000000000..5b8084514675
--- /dev/null
+++ b/sci-biology/blat/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/blat
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/blat/ChangeLog,v 1.1 2008/05/23 17:28:35 weaver Exp $
+
+*blat-34 (23 May 2008)
+
+ 23 May 2008; weaver <weaver@gentoo.org> +blat-34.ebuild:
+ Initial commit. New package from sunrise, bug 135307
+
diff --git a/sci-biology/blat/Manifest b/sci-biology/blat/Manifest
new file mode 100644
index 000000000000..6a0a510a37f2
--- /dev/null
+++ b/sci-biology/blat/Manifest
@@ -0,0 +1,4 @@
+DIST blatSrc34.zip 2142975 RMD160 6c8226305c56ea56504103db6ef401841bc0c6f7 SHA1 4208451b5fa5f6cf30d15afb1df79edc850735db SHA256 b764828fdf8ef4c9994ae4b6148340a776493475edb573b6adf63ae7ca9b2629
+EBUILD blat-34.ebuild 888 RMD160 a83a5b73219305277abc87cd497b34f1d1591ccb SHA1 e2f98d36e7d80a1622d672939faf78c5f6247ba9 SHA256 acb4be978ed5abd18ee87b3b4a53a4c544f5080150c72a2d667dad2854391a2d
+MISC ChangeLog 256 RMD160 a8c846bfbce6d74f2e022189d8d1cd5cbba70f19 SHA1 b633f57022d0ac22ee2b1ad731b43c02f337fb26 SHA256 da35336420071835fffda539e1bf4721db080d82089772b971523f725fbc023f
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/blat/blat-34.ebuild b/sci-biology/blat/blat-34.ebuild
new file mode 100644
index 000000000000..2852feece89c
--- /dev/null
+++ b/sci-biology/blat/blat-34.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/blat/blat-34.ebuild,v 1.1 2008/05/23 17:28:35 weaver Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="The BLAST-Like Alignment Tool, a fast genomic sequence aligner"
+LICENSE="blat"
+HOMEPAGE="http://www.cse.ucsc.edu/~kent/"
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86"
+
+MY_PN="${PN}Src"
+SRC_URI="http://www.soe.ucsc.edu/~kent/src/${MY_PN}${PV}.zip"
+S="${WORKDIR}/${MY_PN}"
+
+DEPEND="app-arch/unzip"
+RDEPEND=""
+
+src_compile() {
+ MACHTYPE=$(tc-arch)
+ [[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386"
+ sed -i 's/-Werror//; s/CFLAGS=//;' "${S}/inc/common.mk"
+ sed -i 's/\(${STRIP} \)/#\1/' "${S}"/{*/makefile,utils/*/makefile,*/*.mk}
+ mkdir -p "${S}/bin/${MACHTYPE}"
+ emake MACHTYPE="${MACHTYPE}" HOME="${S}" || die "emake failed"
+}
+
+src_install() {
+ MACHTYPE=$(tc-arch)
+ [[ ${MACHTYPE} == "x86" ]] && MACHTYPE="i386"
+ dobin "${S}/bin/${MACHTYPE}/"*
+}
diff --git a/sci-biology/blat/metadata.xml b/sci-biology/blat/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/blat/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
+</pkgmetadata>