sci-chemistry/apbs: Drop old

(Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 5 insertions, 292 deletions

diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog
index 13ceeb972cbe..dd3e75012ba4 100644
--- a/sci-chemistry/apbs/ChangeLog
+++ b/sci-chemistry/apbs/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/apbs
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.71 2015/01/04 19:08:24 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.72 2015/01/22 09:05:05 jlec Exp $
+
+  22 Jan 2015; Justin Lecher <jlec@gentoo.org> -apbs-1.3-r3.ebuild,
+  -apbs-1.4.1-r1.ebuild:
+  Drop old
 
   04 Jan 2015; Justin Lecher <jlec@gentoo.org> apbs-1.4.1-r2.ebuild:
   Make test use newly build libs
diff --git a/sci-chemistry/apbs/apbs-1.3-r3.ebuild b/sci-chemistry/apbs/apbs-1.3-r3.ebuild
deleted file mode 100644
index 154132c2fce1..000000000000
--- a/sci-chemistry/apbs/apbs-1.3-r3.ebuild
+++ /dev/null
@@ -1,166 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.3-r3.ebuild,v 1.5 2013/05/02 15:16:35 jlec Exp $
-
-EAPI=4
-
-PYTHON_DEPEND="python? 2"
-
-inherit autotools-utils eutils fortran-2 python toolchain-funcs versionator
-
-MY_PV=$(get_version_component_range 1-3)
-MY_P="${PN}-${MY_PV}"
-
-DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems"
-HOMEPAGE="http://www.poissonboltzmann.org/apbs/"
-SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="arpack doc examples fetk mpi openmp python static-libs tools"
-REQUIRED_USE="mpi? ( !python )"
-
-RDEPEND="
-	dev-libs/maloc[mpi=]
-	virtual/blas
-	sys-libs/readline
-	arpack? ( sci-libs/arpack )
-	fetk? (
-		sci-libs/fetk
-		sci-libs/amd
-		sci-libs/umfpack
-		sci-libs/superlu )
-	mpi? ( virtual/mpi )"
-DEPEND="${DEPEND}
-	virtual/pkgconfig"
-
-S="${WORKDIR}"/"${MY_P}-source"
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-MAKEOPTS+=" -j1"
-
-pkg_setup() {
-	fortran-2_pkg_setup
-	use python && python_set_active_version 2 && python_pkg_setup
-	if [[ -z ${MAXMEM} ]]; then
-		einfo "You can specify the max amount of RAM used"
-		einfo "by setting MAXMEM=\"your size in MB\""
-	else
-		einfo "Settings max memory usage to ${MAXMEM} MB"
-	fi
-}
-
-# git clone ssh://woodpecker/home/jlec/apbs.git
-PATCHES=( "${FILESDIR}"/${P}/00{01..16}* )
-
-src_prepare() {
-	rm -rf contrib/{blas,maloc,opal,zlib} || die
-	find -name "._*" -delete || die
-
-	EPATCH_OPTS="-p1" \
-		autotools-utils_src_prepare
-
-	sed \
-		-e "s:GENTOO_PKG_NAME:${PN}:g" \
-		-i Makefile.am || die "Cannot correct package name"
-	sed \
-		-e 's:libmaloc.a:libmaloc.so:g' \
-		-e 's:-lblas::g' \
-		-i configure.ac || die
-	sed -e 's:opal::g' -i contrib/Makefile.am || die
-	sed \
-		-e 's:noinst_PROGRAMS:bin_PROGRAMS:g' \
-		-i tools/*/Makefile.am || die
-
-	sed \
-		-e "s:AM_CONFIG_HEADER:AC_CONFIG_HEADERS:g" \
-		-e "s:AM_PROG_CC_STDC:AC_PROG_CC:g" \
-		-i configure.ac || die
-
-	AT_NOELIBTOOLIZE=yes eautoreconf
-}
-
-src_configure() {
-	local myeconfargs=( --docdir="${EPREFIX}/usr/share/doc/${PF}" )
-	use arpack && myeconfargs+=( --with-arpack="${EPREFIX}/usr/$(get_libdir)" )
-
-	# check which mpi version is installed and tell configure
-	if use mpi; then
-		export CC="${EPREFIX}/usr/bin/mpicc"
-		export F77="${EPREFIX}/usr/bin/mpif77"
-
-		if has_version sys-cluster/mpich; then
-	 		myeconfargs+=( --with-mpich="${EPREFIX}/usr" )
-		elif has_version sys-cluster/mpich2; then
-			myeconfargs+=( --with-mpich2="${EPREFIX}/usr" )
-		elif has_version sys-cluster/openmpi; then
-			myeconfargs+=( --with-openmpi="${EPREFIX}/usr" )
-		fi
-	fi || die "Failed to select proper mpi implementation"
-
-	if use fetk; then
-		myeconfargs+=( --with-fetk-include="${EPREFIX}/usr/include" --with-fetk-library="${EPREFIX}/usr/$(get_libdir)" )
-	else
-		myeconfargs+=( --disable-fetk )
-	fi
-
-	[[ -n ${MAXMEM} ]] && myeconfargs+=( --with-maxmem=${MAXMEM} )
-
-	if use python; then
-		myeconfargs+=( --enable-tools  )
-	else
-		myeconfargs+=( $(use_enable tools) )
-	fi
-
-	myeconfargs+=(
-		--disable-maloc-rebuild
-		--enable-shared
-		$(use_enable openmp)
-		$(use_enable python)
-		)
-	autotools-utils_src_configure
-}
-
-src_test() {
-	export LC_NUMERIC=C
-	cd examples && make test \
-		|| die "Tests failed"
-	grep -q 'FAILED' "${S}"/examples/TESTRESULTS.log && die "Tests failed"
-}
-
-src_install() {
-	autotools-utils_src_install
-
-	use doc && dohtml -r doc/*
-	use examples && insinto /usr/share/${PN} && doins -r examples
-	use tools && emake DESTDIR="${D}" install-tools
-
-	if use python && ! use mpi; then
-		insinto $(python_get_sitedir)/${PN}
-		doins tools/manip/*.py
-		doins tools/python/{*.py,*.pqr}
-		doins tools/python/*/{*.py,*.so}
-		python_clean_installation_image
-	fi
-
-	if use python || use tools; then
-		mv "${ED}"/usr/bin/analysis{,_apbs} || die
-		mv "${ED}"/usr/bin/smooth{,_apbs} || die
-	fi
-}
-
-pkg_postinst() {
-	use python && python_mod_optimize ${PN}
-	if use python || use tools; then
-		echo
-		elog "Following apps have been renamed"
-		elog "${EPREFIX}/usr/bin/analysis -> ${EPREFIX}/usr/bin/analysis_apbs"
-		elog "${EPREFIX}/usr/bin/smooth -> ${EPREFIX}/usr/bin/smooth_apbs"
-		echo
-	fi
-}
-
-pkg_postrm() {
-	use python && python_mod_cleanup ${PN}
-}
diff --git a/sci-chemistry/apbs/apbs-1.4.1-r1.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r1.ebuild
deleted file mode 100644
index f005123c55bd..000000000000
--- a/sci-chemistry/apbs/apbs-1.4.1-r1.ebuild
+++ /dev/null
@@ -1,125 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.4.1-r1.ebuild,v 1.2 2014/10/30 07:30:54 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit cmake-utils distutils-r1 flag-o-matic multilib toolchain-funcs
-
-GITHUB_REV="74fcb8676de69ed04ddab8976a8b05a6caaf4d65"
-
-DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems"
-HOMEPAGE="http://www.poissonboltzmann.org/apbs/"
-#SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
-SRC_URI="https://github.com/Electrostatics/apbs-pdb2pqr/archive/${GITHUB_REV}.zip -> ${P}.zip"
-
-SLOT="0"
-LICENSE="BSD"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="debug doc examples fast +fetk mpi openmp python tools"
-
-REQUIRED_USE="
-	mpi? ( !python )
-	python? ( tools fetk ${PYTHON_REQUIRED_USE} )"
-
-RDEPEND="
-	dev-cpp/eigen:3
-	dev-libs/maloc[mpi=]
-	virtual/blas
-	sys-libs/readline
-	fetk? (
-		sci-libs/fetk
-		sci-libs/amd
-		sci-libs/umfpack
-		sci-libs/superlu
-	)
-	mpi? ( virtual/mpi )
-	python? ( ${PYTHON_DEPS} )
-"
-DEPEND="${DEPEND}
-	virtual/pkgconfig
-	doc? ( app-doc/doxygen )
-"
-
-S="${WORKDIR}"/${PN}-pdb2pqr-${GITHUB_REV}/${PN}
-
-PATCHES=(
-	"${FILESDIR}"/${P}-multilib.patch
-	"${FILESDIR}"/${P}-manip.patch
-	"${FILESDIR}"/${P}-python.patch
-)
-
-src_prepare() {
-	cmake-utils_src_prepare
-	append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3)
-
-	sed \
-		-e "s:-lblas:$($(tc-getPKG_CONFIG) --libs blas):g" \
-		-e "/TOOLS_PATH/d" \
-		-i CMakeLists.txt || die
-	use doc && MAKEOPTS+=" -j1"
-	if use python; then
-		unset PATCHES || die
-		cd tools/python && distutils-r1_src_prepare
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DCMAKE_SKIP_RPATH=ON
-		-DTOOLS_PATH="${ED}"/usr
-		-DSYS_LIBPATHS="${EPREFIX}"/usr/$(get_libdir)
-		-DLIBRARY_INSTALL_PATH=$(get_libdir)
-		-DFETK_PATH="${EPREFIX}"/usr/
-		-DBUILD_SHARED_LIBS=ON
-		-DENABLE_QUIT=OFF
-		$(cmake-utils_use_build doc DOC)
-		$(cmake-utils_use_build tools TOOLS)
-		-DENABLE_BEM=OFF
-# ENABLE_BEM: Boundary element method using TABIPB
-		$(cmake-utils_use_enable debug DEBUG)
-		$(cmake-utils_use_enable debug VERBOSE_DEBUG)
-		$(cmake-utils_use_enable fast FAST)
-		$(cmake-utils_use_enable fetk FETK)
-		$(cmake-utils_use_enable mpi MPI)
-		$(cmake-utils_use_enable python PYTHON)
-# ENABLE_TINKER: Enable TINKER support
-# ENABLE_iAPBS: Enable iAPBS
-		-DENABLE_iAPBS=ON
-# MAX_MEMORY: Set the maximum memory (in MB) to be used for a job
-	)
-	cmake-utils_src_configure
-	if use python; then
-		cd tools/python && distutils-r1_src_configure
-	fi
-}
-
-src_compile(){
-	cmake-utils_src_compile
-	if use python; then
-		append-ldflags -L"${S}"/lib
-		cd tools/python && distutils-r1_src_compile
-	fi
-}
-
-src_test() {
-	cd tests || die
-	"${PYTHON}" apbs_tester.py -l log || die
-	grep -q 'FAILED' log && die "Tests failed"
-}
-
-src_install() {
-	dodir /usr/bin
-	cmake-utils_src_install
-	local i
-	for i in "${ED}"/usr/bin/*; do
-		if [[ ! "${i}" =~ .*apbs$ ]]; then
-			mv "${i}" "${i}-apbs" || die
-		fi
-	done
-	if use python; then
-		cd tools/python && distutils-r1_src_install
-	fi
-}