Fix doubled entries in wrapper scripts

(Portage version: 2.2.0_alpha51/cvs/Linux x86_64)

1 files changed, 78 insertions, 0 deletions

diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild
new file mode 100644
index 000000000000..0ee47049677d
--- /dev/null
+++ b/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild
@@ -0,0 +1,78 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-tools/pdb-tools-0.1.4-r3.ebuild,v 1.1 2011/08/29 14:05:36 jlec Exp $
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.*"
+
+inherit fortran-2 python toolchain-funcs
+
+DESCRIPTION="Tools for manipulating and doing calculations on wwPDB macromolecule structure files"
+HOMEPAGE="http://code.google.com/p/pdb-tools/"
+SRC_URI="http://${PN}.googlecode.com/files/${PN}_${PV}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-3"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND="
+	sci-chemistry/dssp
+	virtual/fortran"
+DEPEND=""
+
+S="${WORKDIR}"/${PN}_${PV}
+
+src_prepare() {
+	sed "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" -i pdb_sasa.py || die
+	sed "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" -i pdb_satk.py || die
+}
+
+src_compile() {
+	mkdir bin
+	cd satk
+	for i in *.f; do
+		einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}"
+		$(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die
+		$(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die
+		sed "s:${i/.f}.out:${i/.f}:g" -i ../pdb_satk.py || die
+	done
+}
+
+src_install() {
+	insinto /usr/share/${PN}
+	doins -r pdb_data/peptides || die
+	rm -rf pdb_data/peptides || die
+
+	installation() {
+		insinto $(python_get_sitedir)
+		doins -r helper pdb_data || die
+
+		insinto $(python_get_sitedir)/${PN}
+		doins *.py || die
+
+		for i in pdb_*.py; do
+			cat > ${i/.py} <<- EOF
+			#!${EPREFIX}/bin/bash
+			$(PYTHON) -O "${EPREFIX}$(python_get_sitedir)/${PN}/${i}" \$@
+			EOF
+			dobin ${i/.py}
+		done
+	}
+
+	python_execute_function installation
+
+	dobin bin/* || die
+	dodoc README || die
+}
+
+pkg_postinst() {
+	python_mod_optimize ${PN} helper pdb_data
+}
+
+pkg_postrm() {
+	python_mod_cleanup ${PN} helper pdb_data
+}