Version Bump sci-chemistry/aria-2.3.2, 379153

(Portage version: 2.2.0_alpha51/cvs/Linux x86_64)

4 files changed, 106 insertions, 11 deletions

diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog
index fb4a32b09d3c..f1c3eadf41f3 100644
--- a/sci-chemistry/aria/ChangeLog
+++ b/sci-chemistry/aria/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/aria
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.7 2010/11/18 17:10:04 jlec Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.8 2011/08/29 15:28:43 jlec Exp $
+
+*aria-2.3.2 (29 Aug 2011)
+
+  29 Aug 2011; Justin Lecher <jlec@gentoo.org> aria-2.3.1.ebuild,
+  +aria-2.3.2.ebuild, metadata.xml:
+  Version Bump sci-chemistry/aria-2.3.2, 379153
 
   18 Nov 2010; Justin Lecher <jlec@gentoo.org> -files/2.2_p2-numpy.patch,
   -files/2.2_p2-test.patch, -files/sa_ls_cool2.patch, -aria-2.2_p2.ebuild:
diff --git a/sci-chemistry/aria/aria-2.3.1.ebuild b/sci-chemistry/aria/aria-2.3.1.ebuild
index 8139857b752e..f7f9b9af39dc 100644
--- a/sci-chemistry/aria/aria-2.3.1.ebuild
+++ b/sci-chemistry/aria/aria-2.3.1.ebuild
@@ -1,16 +1,17 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.4 2010/07/22 07:08:44 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.1.ebuild,v 1.5 2011/08/29 15:28:43 jlec Exp $
+
+EAPI=3
 
-EAPI="3"
 PYTHON_DEPEND="2"
 PYTHON_USE_WITH="tk"
 
-inherit base python eutils versionator
+inherit base eutils python versionator
 
 MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
 
-DESCRIPTION="Software for automated NOE assignment and NMR structure calculation."
+DESCRIPTION="Automated NOE assignment and NMR structure calculation"
 HOMEPAGE="http://aria.pasteur.fr/"
 SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.1.tar.gz"
 
diff --git a/sci-chemistry/aria/aria-2.3.2.ebuild b/sci-chemistry/aria/aria-2.3.2.ebuild
new file mode 100644
index 000000000000..ab4ea1ec32d3
--- /dev/null
+++ b/sci-chemistry/aria/aria-2.3.2.ebuild
@@ -0,0 +1,88 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2.ebuild,v 1.1 2011/08/29 15:28:43 jlec Exp $
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+PYTHON_USE_WITH="tk"
+
+inherit base eutils python versionator
+
+MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
+
+DESCRIPTION="Automated NOE assignment and NMR structure calculation"
+HOMEPAGE="http://aria.pasteur.fr/"
+SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2.tar.gz"
+
+SLOT="0"
+LICENSE="cns"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND="
+	sci-chemistry/clashlist
+	sci-chemistry/procheck
+	sci-libs/clashscore-db
+	dev-python/numpy
+	dev-python/matplotlib[tk]
+	>=sci-chemistry/cns-1.2.1-r3[aria,openmp]
+	>=dev-lang/tk-8.3
+	>=sci-chemistry/ccpn-2.0.5
+	>=dev-tcltk/tix-8.1.4"
+DEPEND="${RDEPEND}"
+
+RESTRICT="fetch"
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch(){
+	einfo "Go to ${HOMEPAGE}, download ${A}"
+	einfo "and place it in ${DISTDIR}"
+}
+
+src_test(){
+	export CCPNMR_TOP_DIR="${EPREFIX}"/$(python_get_sitedir)
+	export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
+	$(PYTHON) check.py || die
+}
+
+src_install(){
+	insinto "$(python_get_sitedir)/${PN}"
+	doins -r src aria2.py || die "failed to install ${PN}"
+	insinto "$(python_get_sitedir)/${PN}"/cns
+	doins -r cns/{protocols,toppar,src/helplib} || die "failed to install cns part"
+
+	if use examples; then
+		insinto /usr/share/${P}/
+		doins -r examples || die
+	fi
+
+	# ENV
+	cat >> "${T}"/20aria <<- EOF
+	ARIA2="${EPREFIX}/$(python_get_sitedir)/${PN}"
+	EOF
+
+	doenvd "${T}"/20aria
+
+	# Launch Wrapper
+	cat >> "${T}"/aria <<- EOF
+	#!/bin/sh
+	export CCPNMR_TOP_DIR="${EPREFIX}/$(python_get_sitedir)"
+	export PYTHONPATH="${EPREFIX}/$(python_get_sitedir)/ccpn/python"
+	exec "$(PYTHON)" -O "\${ARIA2}"/aria2.py \$@
+	EOF
+
+	dobin "${T}"/aria || die "failed to install wrapper"
+	dosym aria /usr/bin/aria2
+
+	dodoc README || die
+}
+
+pkg_postinst() {
+	python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+	python_mod_cleanup ${PN}
+}
diff --git a/sci-chemistry/aria/metadata.xml b/sci-chemistry/aria/metadata.xml
index c6856dc7f2cf..210ad0db014c 100644
--- a/sci-chemistry/aria/metadata.xml
+++ b/sci-chemistry/aria/metadata.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci</herd>
-<maintainer>
-  <email>jlec@gentoo.org</email>
-</maintainer>
+	<herd>sci</herd>
+	<maintainer>
+		<email>jlec@gentoo.org</email>
+	</maintainer>
 </pkgmetadata>