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authorMarcus D. Hanwell <cryos@gentoo.org>2009-08-01 21:27:55 +0000
committerMarcus D. Hanwell <cryos@gentoo.org>2009-08-01 21:27:55 +0000
commitae8d7749e9f851583c5c9d81c13ce1b4fe319021 (patch)
tree31ce38ddb4c25f084e42eef24a0c32a586088821 /sci-chemistry
parentUse xfconf.eclass. (diff)
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Removed old versions that are no longer required.
(Portage version: 2.2_rc33/cvs/Linux x86_64)
Diffstat (limited to 'sci-chemistry')
-rw-r--r--sci-chemistry/openbabel/ChangeLog8
-rw-r--r--sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff110
-rw-r--r--sci-chemistry/openbabel/openbabel-2.1.1.ebuild20
-rw-r--r--sci-chemistry/openbabel/openbabel-2.2.0.ebuild28
-rw-r--r--sci-chemistry/openbabel/openbabel-2.2.2.ebuild59
5 files changed, 7 insertions, 218 deletions
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index 37791b49f830..de58167ae250 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-chemistry/openbabel
# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/ChangeLog,v 1.28 2009/08/01 15:22:51 cryos Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/ChangeLog,v 1.29 2009/08/01 21:27:55 cryos Exp $
+
+ 01 Aug 2009; Marcus D. Hanwell <cryos@gentoo.org> -openbabel-2.1.1.ebuild,
+ -openbabel-2.2.0.ebuild,
+ -files/openbabel-2.2.0_beta4-obconversion_api_fix.diff,
+ -openbabel-2.2.2.ebuild:
+ Removed old versions that are no longer required.
*openbabel-2.2.3 (01 Aug 2009)
diff --git a/sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff b/sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff
deleted file mode 100644
index 14aa4a0fa21f..000000000000
--- a/sci-chemistry/openbabel/files/openbabel-2.2.0_beta4-obconversion_api_fix.diff
+++ /dev/null
@@ -1,110 +0,0 @@
---- include/openbabel/obconversion.h 2008-02-29 14:06:19.000000000 -0500
-+++ include/openbabel/obconversion.h 2008-04-20 20:17:14.000000000 -0400
-@@ -49,6 +49,9 @@
-
- OBERROR extern OBMessageHandler obErrorLog;
-
-+ typedef std::map<const char*,OBFormat*,CharPtrLess > FMapType;
-+ typedef FMapType::iterator Formatpos;
-+
- //*************************************************
- /// @brief Class to convert from one format to another.
- // Class introduction in obconversion.cpp
-@@ -75,7 +78,7 @@
- static OBFormat* FormatFromMIME(const char* MIME);
-
- ///Repeatedly called to recover available Formats
--// static bool GetNextFormat(Formatpos& itr, const char*& str,OBFormat*& pFormat);
-+ static bool GetNextFormat(Formatpos& itr, const char*& str,OBFormat*& pFormat);
- //@}
-
- /// @name Information
-@@ -142,7 +145,7 @@
- { return &OptionsArray[opttyp];};
-
- ///@brief Set an option of specified type, with optional text
-- void AddOption(const char* opt, Option_type opttyp, const char* txt=NULL);
-+ void AddOption(const char* opt, Option_type opttyp=OUTOPTIONS, const char* txt=NULL);
-
- bool RemoveOption(const char* opt, Option_type optype);
-
-@@ -279,7 +282,7 @@
-
- protected:
- bool SetStartAndEnd();
--// static FMapType& FormatsMap();///<contains ID and pointer to all OBFormat classes
-+ static FMapType& FormatsMap();///<contains ID and pointer to all OBFormat classes
- // static FMapType& FormatsMIMEMap();///<contains MIME and pointer to all OBFormat classes
- typedef std::map<std::string,int> OPAMapType;
- static OPAMapType& OptionParamArray(Option_type typ);
-
---- src/obconversion.cpp 2008-02-29 14:06:05.000000000 -0500
-+++ src/obconversion.cpp 2008-04-20 20:18:28.000000000 -0400
-@@ -324,6 +324,42 @@
- return count;
- }
-
-+ FMapType& OBConversion::FormatsMap()
-+ {
-+ static FMapType* fm = new FMapType;
-+ return *fm;
-+ }
-+
-+ bool OBConversion::GetNextFormat(Formatpos& itr, const char*& str,OBFormat*& pFormat)
-+ {
-+ pFormat = NULL;
-+ if(str==NULL)
-+ itr = FormatsMap().begin();
-+ else
-+ itr++;
-+ if(itr == FormatsMap().end())
-+ {
-+ str=NULL;
-+ pFormat=NULL;
-+ return false;
-+ }
-+ static string s;
-+ s =itr->first;
-+ pFormat = itr->second;
-+ if(pFormat)
-+ {
-+ string description(pFormat->Description());
-+ s += " -- ";
-+ s += description.substr(0,description.find('\n'));
-+ }
-+
-+ if(pFormat->Flags() & NOTWRITABLE) s+=" [Read-only]";
-+ if(pFormat->Flags() & NOTREADABLE) s+=" [Write-only]";
-+
-+ str = s.c_str();
-+ return true;
-+ }
-+
- //////////////////////////////////////////////////////
- /// Sets the formats from their ids, e g CML.
- /// If inID is NULL, the input format is left unchanged. Similarly for outID
-@@ -486,7 +522,7 @@
- if(!ret)
- {
- //error or termination request: terminate unless
-- // -e option requested and sucessfully can skip past current object
-+ // -e option requested and successfully can skip past current object
- if(!IsOption("e", GENOPTIONS) || pInFormat->SkipObjects(0,this)!=1)
- break;
- }
-@@ -1093,7 +1129,14 @@
-
- //INPUT
- if(FileList.empty())
-- pIs = NULL;
-+ {
-+ pIs = NULL;
-+ if(HasMultipleOutputFiles)
-+ {
-+ obErrorLog.ThrowError(__FUNCTION__,"Cannot use multiple output files without an input file", obError);
-+ return 0;
-+ }
-+ }
- else
- {
- if(FileList.size()>1 || OutputFileName.substr(0,2)=="*.")
diff --git a/sci-chemistry/openbabel/openbabel-2.1.1.ebuild b/sci-chemistry/openbabel/openbabel-2.1.1.ebuild
deleted file mode 100644
index 31c08d70b38c..000000000000
--- a/sci-chemistry/openbabel/openbabel-2.1.1.ebuild
+++ /dev/null
@@ -1,20 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.1.1.ebuild,v 1.2 2008/07/06 21:00:29 markusle Exp $
-
-DESCRIPTION="Open Babel interconverts file formats used in molecular modeling"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-KEYWORDS="~amd64 ~ppc ~sparc ~x86"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-RDEPEND="!sci-chemistry/babel"
-
-src_install () {
- make DESTDIR="${D}" install || die "make install failed."
- dodoc AUTHORS ChangeLog NEWS README THANKS
- cd doc
- dohtml *.html *.png
- dodoc *.inc README* *.inc *.mol2
-}
diff --git a/sci-chemistry/openbabel/openbabel-2.2.0.ebuild b/sci-chemistry/openbabel/openbabel-2.2.0.ebuild
deleted file mode 100644
index 9886092c905a..000000000000
--- a/sci-chemistry/openbabel/openbabel-2.2.0.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.2.0.ebuild,v 1.2 2008/11/02 07:46:39 vapier Exp $
-
-inherit eutils
-
-DESCRIPTION="interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-
-KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-
-RDEPEND="!sci-chemistry/babel
- dev-libs/libxml2"
-DEPEND="${RDEPEND}
- dev-libs/boost
- dev-lang/perl"
-
-src_install() {
- emake DESTDIR="${D}" install || die "make install failed."
- dodoc AUTHORS ChangeLog NEWS README THANKS
- cd doc
- dohtml *.html *.png
- dodoc *.inc README* *.inc *.mol2
-}
diff --git a/sci-chemistry/openbabel/openbabel-2.2.2.ebuild b/sci-chemistry/openbabel/openbabel-2.2.2.ebuild
deleted file mode 100644
index 2a4177ca0d1d..000000000000
--- a/sci-chemistry/openbabel/openbabel-2.2.2.ebuild
+++ /dev/null
@@ -1,59 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.2.2.ebuild,v 1.2 2009/07/20 21:47:17 mr_bones_ Exp $
-
-EAPI=1
-
-inherit eutils
-
-DESCRIPTION="interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-
-KEYWORDS="~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86"
-SLOT="0"
-LICENSE="GPL-2"
-IUSE="doc"
-
-RDEPEND="!sci-chemistry/babel
- >=dev-libs/libxml2-2.6.5
- sys-libs/zlib"
-
-DEPEND="${RDEPEND}
- >=dev-libs/boost-1.33.1
- dev-lang/perl
- doc? ( app-doc/doxygen )"
-
-src_unpack() {
- unpack ${A}
- cd "${S}"
- epatch "${FILESDIR}/${PN}-2.2.0-doxyfile.patch"
-}
-
-src_compile() {
- econf \
- --enable-static \
- || die "econf failed"
- emake || die "emake failed"
- if use doc ; then
- emake docs || die "make docs failed"
- fi
-}
-
-src_test() {
- emake check || die "make check failed"
-}
-
-src_install() {
- emake DESTDIR="${D}" install || die "make install failed"
- dodoc AUTHORS ChangeLog NEWS README THANKS
- cd doc
- dohtml *.html *.png
- dodoc *.inc README* *.inc *.mol2
- if use doc ; then
- dodir /usr/share/doc/${PF}/API/html
- insinto /usr/share/doc/${PF}/API/html
- cd API/html
- doins *
- fi
-}