diff options
| -rw-r--r-- | sci-chemistry/pdb-extract/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild | 56 | ||||
| -rw-r--r-- | sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild | 81 |
3 files changed, 9 insertions, 139 deletions
diff --git a/sci-chemistry/pdb-extract/ChangeLog b/sci-chemistry/pdb-extract/ChangeLog index f2c7b8d33b88..42082a236dc8 100644 --- a/sci-chemistry/pdb-extract/ChangeLog +++ b/sci-chemistry/pdb-extract/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-chemistry/pdb-extract -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.18 2011/08/01 19:27:59 maekke Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.19 2012/04/24 06:20:06 jlec Exp $ + + 24 Apr 2012; Justin Lecher <jlec@gentoo.org> -pdb-extract-1.700.ebuild, + -pdb-extract-3.004-r1.ebuild: + Drop old + + 24 Apr 2012; Justin Lecher <jlec@gentoo.org> Manifest: + Drop old 01 Aug 2011; Markus Meier <maekke@gentoo.org> pdb-extract-3.004-r2.ebuild: amd64/x86 stable, bug #375901 diff --git a/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild b/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild deleted file mode 100644 index 0aa1036a20b2..000000000000 --- a/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild,v 1.7 2011/07/21 19:04:04 jlec Exp $ - -inherit eutils toolchain-funcs multilib - -MY_P="${PN}-v${PV}-prod-src" - -DESCRIPTION="Tools for extracting mmCIF data from structure determination applications" -HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html" -SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz" - -LICENSE="PDB" -SLOT="0" -KEYWORDS="~amd64 ppc x86" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - sci-libs/cifparse-obj" -PDEPEND="sci-libs/rcsb-data" - -S="${WORKDIR}/${MY_P}" - -src_unpack() { - unpack ${A} - epatch "${FILESDIR}"/respect-cflags-and-fix-install.patch - cd "${S}" - - # Get rid of unneeded directories, to make sure we use system files - ebegin "Deleting redundant directories" - rm -rf btree-obj* ciflib-common* cifobj-common* cif-table-obj* maxit* \ - misclib* regex* validation* - eend - - sed -i \ - -e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \ - -e "s:^\(GINCLUDE=\).*:\1-I/usr/include/rcsb:g" \ - -e "s:^\(LIBDIR=\).*:\1/usr/$(get_libdir):g" \ - "${S}"/etc/make.* -} - -src_compile() { - emake || die "make failed" -} - -src_install() { - exeinto /usr/bin - doexe bin/* || die - dolib.a lib/* || die - insinto /usr/include/rcsb - doins include/* || die - dodoc README-source README - insinto /usr/lib/rcsb/pdb-extract-data - doins pdb-extract-data/* || die -} diff --git a/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild b/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild deleted file mode 100644 index 471f70af534b..000000000000 --- a/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild +++ /dev/null @@ -1,81 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild,v 1.2 2011/07/21 19:04:04 jlec Exp $ - -EAPI=3 - -inherit eutils toolchain-funcs multilib prefix - -MY_P="${PN}-v${PV}-prod-src" - -DESCRIPTION="Tools for extracting mmCIF data from structure determination applications" -HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html" -SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz" - -LICENSE="PDB" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="!<app-text/html-xml-utils-5.3" -DEPEND="${RDEPEND} - >=sci-libs/cifparse-obj-7.025" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-cflags-install.patch \ - "${FILESDIR}"/${P}-gcc-4.3.patch \ - "${FILESDIR}"/${P}-Makefile.patch \ - "${FILESDIR}"/${P}-env.patch - - sed -i "s:GENTOOLIBDIR:$(get_libdir):g" \ - pdb-extract-v3.0/Makefile \ - || die "Failed to fix libdir" - - # Get rid of unneeded directories, to make sure we use system files - ebegin "Deleting redundant directories" - rm -rf cif-file-v1.0 cifobj-common-v4.1 cifparse-obj-v7.0 \ - misclib-v2.2 regex-v2.2 tables-v8.0 - eend - - sed -i \ - -e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \ - -e "s:^\(CC=\).*:\1$(tc-getCC):g" \ - -e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \ - -e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \ - "${S}"/etc/make.* \ - || die "Failed to fix makefiles" - - eprefixify pdb-extract-v3.0/Makefile etc/* -} - -src_install() { - dobin bin/pdb_extract{,_sf} \ - || die "failed to install binaries" - newbin bin/extract extract-pdb \ - || die "failed to rename extract binary" - dolib.a lib/pdb-extract.a \ - || die "failed to install library" - insinto /usr/include/rcsb - doins include/* \ - || die "failed to install include files" - dodoc README-source README \ - || die "failed to install docs" - insinto /usr/lib/rcsb/pdb-extract-data - doins pdb-extract-data/* \ - || die "failed to install data files" - - cat >> "${T}"/envd <<- EOF - PDB_EXTRACT="${EPREFIX}/usr/lib/rcsb/" - PDB_EXTRACT_ROOT="${EPREFIX}/usr/" - EOF - - newenvd "${T}"/envd 20pdb-extract \ - || die "failed to install env files" -} - -pkg_postinst() { - ewarn "We moved extract to extract-pdb due to multiple collision of ${EROOT}usr/bin/extract" -} |