diff options
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/primer3/ChangeLog | 32 | ||||
-rw-r--r-- | sci-biology/primer3/Manifest | 4 | ||||
-rw-r--r-- | sci-biology/primer3/files/digest-primer3-1.0.0 | 1 | ||||
-rw-r--r-- | sci-biology/primer3/metadata.xml | 17 | ||||
-rw-r--r-- | sci-biology/primer3/primer3-1.0.0.ebuild | 32 |
5 files changed, 86 insertions, 0 deletions
diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog new file mode 100644 index 000000000000..9b5cbfe2fa71 --- /dev/null +++ b/sci-biology/primer3/ChangeLog @@ -0,0 +1,32 @@ +# ChangeLog for app-sci/primer3 +# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.1 2004/12/23 19:13:38 ribosome Exp $ + +*primer3-1.0.0 (23 Dec 2004) + + 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +primer3-1.0.0.ebuild: + Moved from app-sci/primer3 to sci-biology/primer3. + + 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -primer3-0.9.ebuild, + primer3-1.0.0.ebuild: + Removed old version. Added 1.0 to x86. Fixed regression test. + +*primer3-1.0.0 (10 Aug 2004) + + 10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> + primer3-0.9.ebuild: + Added to x86. + primer3-1.0.0.ebuild: + Updated package. Added regression test support. + + 24 Jun 2004; David Holm <dholm@gentoo.org> primer3-0.9.ebuild: + Added to ~ppc. + +*primer3-0.9 (23 Jun 2004) + + 23 Jun 2004; Olivier Fisette <ribosome@gentoo.org> + primer3-0.9.ebuild, metadata.xml : + Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>. + Reference: Gentoo Bugzilla, bug #54036 + diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest new file mode 100644 index 000000000000..39aea177cf9f --- /dev/null +++ b/sci-biology/primer3/Manifest @@ -0,0 +1,4 @@ +MD5 3dfcbfa98dcdf0382e9e6657be56eab3 primer3-1.0.0.ebuild 701 +MD5 8d47023a5fd0eb0143352ba613597cd6 ChangeLog 885 +MD5 a3a36dab6877af45d7b14ec9edea31d9 metadata.xml 713 +MD5 fc13dfb772f9bdd09bc788514faa4abe files/digest-primer3-1.0.0 65 diff --git a/sci-biology/primer3/files/digest-primer3-1.0.0 b/sci-biology/primer3/files/digest-primer3-1.0.0 new file mode 100644 index 000000000000..e6dbc9a3f602 --- /dev/null +++ b/sci-biology/primer3/files/digest-primer3-1.0.0 @@ -0,0 +1 @@ +MD5 58605ee607f6218a2a775345b10d15fa primer3_1.0.0.tar.gz 936696 diff --git a/sci-biology/primer3/metadata.xml b/sci-biology/primer3/metadata.xml new file mode 100644 index 000000000000..c4e1042f1c19 --- /dev/null +++ b/sci-biology/primer3/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> + <longdescription> + Primer3 picks primers for PCR reactions, considering: oligonucleotide + melting temperature, size, GC content, and primer-dimer possibilities; + PCR product size; positional constraints within the source sequence; + and miscellaneous other constraints. All of these criteria are + user-specifiable as constraints, and some are specifiable as terms in + an objective function that characterizes an optimal primer pair. + </longdescription> +</pkgmetadata> diff --git a/sci-biology/primer3/primer3-1.0.0.ebuild b/sci-biology/primer3/primer3-1.0.0.ebuild new file mode 100644 index 000000000000..072ff0107e69 --- /dev/null +++ b/sci-biology/primer3/primer3-1.0.0.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.0.0.ebuild,v 1.1 2004/12/23 19:13:38 ribosome Exp $ + +DESCRIPTION="Design primers for PCR reactions." +HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html" +SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz" +LICENSE="whitehead" + +SLOT="0" +KEYWORDS="x86 ~ppc" +IUSE="" + +RDEPEND="" + +DEPEND="dev-lang/perl" + +S=${WORKDIR}/${PN}_${PV}/src + +src_compile() { + emake -e || die +} + +src_test () { + cd ../test + perl primer_test.pl primer3_core || die +} + +src_install () { + dobin primer3_core + dodoc release_notes ../README ../example +} |