diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/cufflinks/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/cufflinks/cufflinks-2.2.1.ebuild | 39 |
2 files changed, 45 insertions, 1 deletions
diff --git a/sci-biology/cufflinks/ChangeLog b/sci-biology/cufflinks/ChangeLog index 58f03a12e14a..7a6426be6048 100644 --- a/sci-biology/cufflinks/ChangeLog +++ b/sci-biology/cufflinks/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/cufflinks # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.7 2014/09/25 15:21:35 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.8 2014/09/25 16:11:26 jlec Exp $ + +*cufflinks-2.2.1 (25 Sep 2014) + + 25 Sep 2014; Justin Lecher <jlec@gentoo.org> +cufflinks-2.2.1.ebuild: + Version BUmp 25 Sep 2014; Justin Lecher <jlec@gentoo.org> cufflinks-1.3.0-r1.ebuild: Fix dep due to uncompatible samtools release diff --git a/sci-biology/cufflinks/cufflinks-2.2.1.ebuild b/sci-biology/cufflinks/cufflinks-2.2.1.ebuild new file mode 100644 index 000000000000..2c59840e5e83 --- /dev/null +++ b/sci-biology/cufflinks/cufflinks-2.2.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-2.2.1.ebuild,v 1.1 2014/09/25 16:11:26 jlec Exp $ + +EAPI=5 + +inherit autotools-utils flag-o-matic toolchain-funcs + +DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" +HOMEPAGE="http://cufflinks.cbcb.umd.edu/" +SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" + +SLOT="0" +LICENSE="Artistic" +IUSE="debug" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + >=sci-biology/samtools-0.1.18 + <sci-biology/samtools-1 + >=dev-libs/boost-1.47.0:= + dev-cpp/eigen:3 +" +RDEPEND="${DEPEND}" + +src_prepare() { + append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3) + autotools-utils_src_prepare +} + +src_configure() { + local myeconfargs=( + --disable-optim + --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" + --with-bam="${EPREFIX}/usr/" + $(use_enable debug) + ) + autotools-utils_src_configure +} |