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* pymmlib: bump to 1.2.0.Donnie Berkholz2011-06-286-49/+85
| | | | skittles.py doesn't work because we aren't building tlsvld yet.
* vtk: Drop, it's way outdated.Donnie Berkholz2011-03-037-644/+0
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* pymc: add src_install() that installs docs.Donnie Berkholz2010-04-202-1/+6
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* New package pymc: Markov chain Monte Carlo for Python.Donnie Berkholz2009-12-302-0/+28
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* vtk: bump to 5.4.0Donnie Berkholz2009-07-117-0/+644
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* fox: we need to install FoX-config so abinit will find fox.Donnie Berkholz2009-03-272-5/+1
| | | | | Who cares if it's broken for the time being and returns nonsensical results to --libs and --cflags, nobody uses it.
* wannier90: install .mod files, don't try building in parallel.Donnie Berkholz2009-03-272-4/+6
| | | | | Parallel builds are notoriously unstable with fortran90/95 when it uses .mod files.
* fox: Lots of cleanup.Donnie Berkholz2009-03-264-42/+39
| | | | | | | | | | - Drop an obsolete patch. - Pull in part of a patch from a contributor on the abinit 5.6.x bug. - Clean up src_install by using the patch. - Don't install FoX-config. It's too annoying to get it right, because it's used during the build with one set of variable values and after installed with another, but it lacks any mechanism for updating these. - Simplify compiler-flags setup.
* libxc: Simplify compiler-flag setup. Drop src_test().Donnie Berkholz2009-03-262-17/+8
| | | | | Upstream advises that src_test is impossible to analyze in an automated fashion.
* bigdft, etsf_io: Simplify compiler-flag setup.Donnie Berkholz2009-03-264-18/+4
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* wannier90: simplify compiler-flag setup.Donnie Berkholz2009-03-262-9/+2
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* etsf_io: various fixes.Donnie Berkholz2009-03-162-7/+12
| | | | | | -Run testsuite -Install .mod to /usr/lib/finclude -Use FCFLAGS right
* bigdft: finclude, not include.Donnie Berkholz2009-03-162-2/+2
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* bigdft: various fixes.Donnie Berkholz2009-03-162-8/+12
| | | | | | -Run testsuite (consequently build libabinit and binaries) -Install .mod to /usr/lib/finclude -Use FCFLAGS right
* libxc: run testsuite.Donnie Berkholz2009-03-162-1/+9
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* libxc, string_f: more packages for sci-physics/abinit plugins.Donnie Berkholz2009-03-162-0/+52
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* Add some dependencies of abinit, split out from bundled plugins.Donnie Berkholz2009-03-1513-0/+545
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* ccp4-related things moved to the science overlay.Donnie Berkholz2009-03-0214-558/+0
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* rasmol: bump to latest. also added new dep, cbflib. (#238302).Donnie Berkholz2008-12-034-0/+120
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* mmdb: bump to 1.0.10. Lots of stuff is broken with it.Donnie Berkholz2008-12-035-0/+62
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* burrow-owl: add release ebuild for 1.4 and new starparse dep.Donnie Berkholz2008-08-093-0/+65
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* Add balbes-db, split out from ccp4.Donnie Berkholz2008-08-032-0/+28
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* Move ccp4-libs to sci-libs.Donnie Berkholz2008-08-018-0/+410
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* starparse: add live ebuild, burrow-owl dep.Donnie Berkholz2008-07-252-0/+29
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* pgd-utils: bump to 0.4.2Donnie Berkholz2008-06-162-2/+2
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* mmtk: bump to 2.5.23.Donnie Berkholz2008-05-123-6/+3
| | | | | numpy compat fixes, work with older scientificpython versions, force-field work.
* pgd-utils: bump to 0.4.1.Donnie Berkholz2008-03-303-13/+5
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* ann: new package to find approximate nearest neighbors.Donnie Berkholz2008-03-252-0/+43
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* vcg: add dep of qutemol.Donnie Berkholz2008-03-243-0/+129
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* mmtk: Bump to 2.5.22Donnie Berkholz2008-03-142-10/+4
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* ~amd64 procheck and pymmlibDonnie Berkholz2008-03-122-14/+2
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* Bump to 0.3Donnie Berkholz2007-10-144-11/+12
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* Drop unneeded packages and packages that exist in other repos.Donnie Berkholz2007-10-143-48/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | app-editors/xxe pp-text/docbook-xsl-stylesheets app-text/linuxdoc-tools dev-cpp/libgnomemm dev-cpp/libgnomeuimm dev-cpp/libxmlpp dev-java/jogl dev-java/xmlgraphics-commons dev-libs/gmp dev-libs/libpthread-stubs dev-python/sexy-python games-fps/legends gnome-extra/gnome-gpg mail-client/mahogany mail-client/mutt media-gfx/pstoedit media-libs/fontconfig media-libs/glitz media-libs/gnonlin media-libs/mesa media-plugins/gst-plugins-taglib media-sound/banshee media-sound/exaile media-sound/jokosher media-sound/listen media-sound/traverso media-video/jahshaka media-video/pitivi sci-chemistry/coot sci-chemistry/ghemical sci-chemistry/gtk-gamess sci-libs/libghemical sci-visualization/gnuplot sys-devel/binutils sci-visualization/gnuplot sys-devel/binutils
* pymmlib: bump to 1.0.0Donnie Berkholz2007-08-205-0/+120
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* pgd-utils: update manifest/digestDonnie Berkholz2007-08-142-7/+7
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* pgd-utils: bump to 0.2.Donnie Berkholz2007-08-144-12/+12
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* Rename pgd to pgd-utils.Donnie Berkholz2007-08-143-0/+0
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* Add pgd, a collection of scripts to access the Protein Geometry Database.Donnie Berkholz2007-08-133-0/+26
| | | | | Useless for anyone else, because this software has not yet been publicly released.
* Add dev version of mmtk. PyMol plugins for it are available on the homepage.Donnie Berkholz2006-12-143-0/+46
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* Remove {blas,lapack}-config wrappers around eselect. They won't be needed.Donnie Berkholz2006-10-208-288/+0
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* blas-goto: merged to gentoo-x86Donnie Berkholz2006-10-203-33/+0
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* blas-goto: bump, final QA for main tree.Donnie Berkholz2006-10-203-158/+10
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* Delete lots of stuff merged to gentoo-x86 or otherwise no longer useful.Donnie Berkholz2006-09-3013-884/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | app-emulation/winex-cvs -- replaced by cedega-cvs from zugaina overlay app-pda/dopi -- in tree app-pda/gnome-pilot -- not using this, although the netsync patch is useful cross-powerpc-unknown-linux-gnu/binutils -- cross toolchains cross-powerpc-unknown-linux-gnu/gcc cross-powerpc-unknown-linux-gnu/gdb cross-powerpc-unknown-linux-gnu/glibc cross-powerpc-unknown-linux-gnu/linux-headers dev-cpp/cairomm -- all the cpp bindings were merged to gentoo-x86 dev-cpp/gconfmm dev-cpp/glibmm dev-cpp/gnome-vfsmm dev-cpp/gtkmm dev-cpp/libglademm dev-cpp/libgnomecanvasmm dev-cpp/libgnomemm dev-cpp/libgnomeuimm dev-util/debugedit -- don't use it games-fps/sauerbraten -- added to gentoo-x86 as binary build sci-libs/libscigraphica -- merged to gentoo-x86 sci-libs/pgplot -- broken with gfortran anyway, missing intrinsics sci-visualization/scigraphica -- merged to gentoo-x86 sys-auth/pam_pkcs11 -- merged to gentoo-x86 x11-misc/xsri -- merged to gentoo-x86
* scipy, pyxplot: merged to gentoo-x86Donnie Berkholz2006-09-263-143/+0
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* Add non-working scipy bump, and new package PyXPlot.Donnie Berkholz2006-09-213-0/+143
| | | | | new scipy should work with numpy 1.0* but I can't get it compiling yet. PyXPlot is like gnuplot but produces better graphs.
* Add ghemical/libghemical/gtk-gamess from je_fro, still broken.Donnie Berkholz2006-09-183-0/+48
| | | | | Reportedly libghemical doesn't work with USE="mpqc mopac7". mopac7 uses f2c stuff and we aren't set up for that with gcc-4 yet, so it needs changes.
* cctbx: newer ebuild, still brokenDonnie Berkholz2006-09-022-0/+48
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* New blas/lapack ebuilds merged into gentoo-x86.Donnie Berkholz2006-08-2469-5586/+0
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* Bump WIP cctbxDonnie Berkholz2006-06-196-110/+8
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* Merged to gentoo-x86Donnie Berkholz2006-06-163-47/+0
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