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author | 2013-08-27 17:38:19 +0200 | |
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committer | 2013-08-27 17:38:19 +0200 | |
commit | 3ed6ae45fdc67fedd3886c00b0117709c9c90ebe (patch) | |
tree | 221985035de4baf46f676baded7aecf54d0ee4fa /config | |
parent | doc/html: #! ERROR, deptype logging (diff) | |
download | R_overlay-3ed6ae45fdc67fedd3886c00b0117709c9c90ebe.tar.gz R_overlay-3ed6ae45fdc67fedd3886c00b0117709c9c90ebe.tar.bz2 R_overlay-3ed6ae45fdc67fedd3886c00b0117709c9c90ebe.zip |
per-repo selfdep rule files
Diffstat (limited to 'config')
-rw-r--r-- | config/simple-deprules.d/selfdeps | 49 | ||||
-rw-r--r-- | config/simple-deprules.d/selfdeps.d/README | 11 | ||||
-rw-r--r-- | config/simple-deprules.d/selfdeps.d/sci-BIOC | 13 | ||||
-rw-r--r-- | config/simple-deprules.d/selfdeps.d/sci-CRAN | 40 |
4 files changed, 71 insertions, 42 deletions
diff --git a/config/simple-deprules.d/selfdeps b/config/simple-deprules.d/selfdeps index 2037de2..63e49bc 100644 --- a/config/simple-deprules.d/selfdeps +++ b/config/simple-deprules.d/selfdeps @@ -1,16 +1,11 @@ -#deptype pkg,selfdep +#! NOPARSE +#! ERROR +# Replaced by the selfdeps.d directory, which contains per-repo selfdep files. +# +# This file lists old rules, which are not yet included there. +# -# FIXME: this may be incorrect -~sci-R/BSgenome { - BSgenome.Celegans.UCSC.ce2 - BSgenome.Dmelanogaster.UCSC.dm3 - BSgenome.Ecoli.NCBI.20080805 - BSgenome.Hsapiens.UCSC.hg18 - BSgenome.Hsapiens.UCSC.hg19 - BSgenome.Mmusculus.UCSC.mm9 - BSgenome.Rnorvegicus.UCSC.rn4 - BSgenome.Scerevisiae.UCSC.sacCer2 -} +#deptype pkg,selfdep sci-R/chron :: get.hist.quote needs packagechron. @@ -20,38 +15,8 @@ sci-R/chron :: get.hist.quote needs packagechron. CoCoObjects CoCoRaw } - -sci-R/csound { - A valid copy of the Csound library must be present.Csound can be downloaded from http://www.csounds.com. Thelibrary is included in the default Windows and Mac OS Xdistributions - playitbyr creates sound using the csound package - which requires the free and open source software synthesizerCsound -} - -~sci-R/mimR :: mim - -sci-R/MVA { - white.test needs packagemva - white.test needs package mva -} - -sci-R/quadprog :: portfolio.optim needs package quadprog - -sci-R/rgl :: rgl packages for rendering - -~sci-R/sgeostat { - sgeostat. - geostat. -} - sci-R/survival4 :: survival4 if survival models are to be used. ~sci-R/survival5 :: survival5 for some examples sci-R/survival5 :: survival5 if survival models are to be used. ~sci-R/VhayuR :: Vhayu - -sci-R/xgobi { - xgobi must be installed additionally - xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/ -} - -~sci-R/BayesFactor :: BayesFactorPCL diff --git a/config/simple-deprules.d/selfdeps.d/README b/config/simple-deprules.d/selfdeps.d/README new file mode 100644 index 0000000..30b0051 --- /dev/null +++ b/config/simple-deprules.d/selfdeps.d/README @@ -0,0 +1,11 @@ +#! NOPARSE +# +# Use one file per repo "group" (=same category), so that category moves +# can be edited easily (e.g. with sed). +# +# Don't forget one of +# #deptype sys,selfdep +# #deptype pkg,selfdep +# at the top of each rule file. +# +#! ERROR diff --git a/config/simple-deprules.d/selfdeps.d/sci-BIOC b/config/simple-deprules.d/selfdeps.d/sci-BIOC new file mode 100644 index 0000000..4ade538 --- /dev/null +++ b/config/simple-deprules.d/selfdeps.d/sci-BIOC @@ -0,0 +1,13 @@ +#deptype pkg,selfdep + +# FIXME: this may be incorrect +~sci-R/BSgenome { + BSgenome.Celegans.UCSC.ce2 + BSgenome.Dmelanogaster.UCSC.dm3 + BSgenome.Ecoli.NCBI.20080805 + BSgenome.Hsapiens.UCSC.hg18 + BSgenome.Hsapiens.UCSC.hg19 + BSgenome.Mmusculus.UCSC.mm9 + BSgenome.Rnorvegicus.UCSC.rn4 + BSgenome.Scerevisiae.UCSC.sacCer2 +} diff --git a/config/simple-deprules.d/selfdeps.d/sci-CRAN b/config/simple-deprules.d/selfdeps.d/sci-CRAN new file mode 100644 index 0000000..5935939 --- /dev/null +++ b/config/simple-deprules.d/selfdeps.d/sci-CRAN @@ -0,0 +1,40 @@ +#deptype pkg,selfdep + +sci-CRAN/csound { + A valid copy of the Csound library must be present.Csound can be downloaded from http://www.csounds.com. Thelibrary is included in the default Windows and Mac OS Xdistributions + playitbyr creates sound using the csound package + which requires the free and open source software synthesizerCsound +} + +~sci-CRAN/mimR :: mim + +sci-CRAN/quadprog :: portfolio.optim needs package quadprog + +sci-CRAN/rgl :: rgl packages for rendering + +sci-CRAN/MVA { + white.test needs packagemva + white.test needs package mva +} + +~sci-CRAN/sgeostat { + sgeostat. + geostat. +} + +# the following rule is _not_ correct +# (the dependency strings listed here want the "xgobi" program from +# http://www.research.att.com/areas/stat/xgobi/, not the R package) +# +## sci-CRAN/xgobi { +## xgobi must be installed additionally +## xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/ +## } + +~sci-CRAN/BayesFactor :: BayesFactorPCL + +>=sci-CRAN/adimpro-0.4.2 :: adimpro (>= 0.4.2)The R-package 'adimpro' (for reading + +sci-CRAN/adimpro { + The R-package 'adimpro' (for reading +} |