per-repo selfdep rule files

4 files changed, 71 insertions, 42 deletions

diff --git a/config/simple-deprules.d/selfdeps b/config/simple-deprules.d/selfdeps
index 2037de2..63e49bc 100644
--- a/config/simple-deprules.d/selfdeps
+++ b/config/simple-deprules.d/selfdeps
@@ -1,16 +1,11 @@
-#deptype pkg,selfdep
+#! NOPARSE
+#! ERROR
+# Replaced by the selfdeps.d directory, which contains per-repo selfdep files.
+#
+# This file lists old rules, which are not yet included there.
+#
 
-# FIXME: this may be incorrect
-~sci-R/BSgenome {
-	BSgenome.Celegans.UCSC.ce2
-	BSgenome.Dmelanogaster.UCSC.dm3
-	BSgenome.Ecoli.NCBI.20080805
-	BSgenome.Hsapiens.UCSC.hg18
-	BSgenome.Hsapiens.UCSC.hg19
-	BSgenome.Mmusculus.UCSC.mm9
-	BSgenome.Rnorvegicus.UCSC.rn4
-	BSgenome.Scerevisiae.UCSC.sacCer2
-}
+#deptype pkg,selfdep
 
 sci-R/chron :: get.hist.quote needs packagechron.
 
@@ -20,38 +15,8 @@ sci-R/chron :: get.hist.quote needs packagechron.
 	CoCoObjects
 	CoCoRaw
 }
-
-sci-R/csound {
-	A valid copy of the Csound library must be present.Csound can be downloaded from http://www.csounds.com. Thelibrary is included in the default Windows and Mac OS Xdistributions
-	playitbyr creates sound using the csound package
-	which requires the free and open source software synthesizerCsound
-}
-
-~sci-R/mimR :: mim
-
-sci-R/MVA {
-	white.test needs packagemva
-	white.test needs package mva
-}
-
-sci-R/quadprog :: portfolio.optim needs package quadprog
-
-sci-R/rgl :: rgl packages for rendering
-
-~sci-R/sgeostat {
-	sgeostat.
-	geostat.
-}
-
 sci-R/survival4 :: survival4 if survival models are to be used.
 ~sci-R/survival5 :: survival5 for some examples
 sci-R/survival5 :: survival5 if survival models are to be used.
 
 ~sci-R/VhayuR :: Vhayu
-
-sci-R/xgobi {
-	xgobi must be installed additionally
-	xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/
-}
-
-~sci-R/BayesFactor :: BayesFactorPCL
diff --git a/config/simple-deprules.d/selfdeps.d/README b/config/simple-deprules.d/selfdeps.d/README
new file mode 100644
index 0000000..30b0051
--- /dev/null
+++ b/config/simple-deprules.d/selfdeps.d/README
@@ -0,0 +1,11 @@
+#! NOPARSE
+#
+#  Use one file per repo "group" (=same category), so that category moves
+#  can be edited easily (e.g. with sed).
+#
+#  Don't forget one of
+#    #deptype sys,selfdep
+#    #deptype pkg,selfdep
+#  at the top of each rule file.
+#
+#! ERROR
diff --git a/config/simple-deprules.d/selfdeps.d/sci-BIOC b/config/simple-deprules.d/selfdeps.d/sci-BIOC
new file mode 100644
index 0000000..4ade538
--- /dev/null
+++ b/config/simple-deprules.d/selfdeps.d/sci-BIOC
@@ -0,0 +1,13 @@
+#deptype pkg,selfdep
+
+# FIXME: this may be incorrect
+~sci-R/BSgenome {
+   BSgenome.Celegans.UCSC.ce2
+   BSgenome.Dmelanogaster.UCSC.dm3
+   BSgenome.Ecoli.NCBI.20080805
+   BSgenome.Hsapiens.UCSC.hg18
+   BSgenome.Hsapiens.UCSC.hg19
+   BSgenome.Mmusculus.UCSC.mm9
+   BSgenome.Rnorvegicus.UCSC.rn4
+   BSgenome.Scerevisiae.UCSC.sacCer2
+}
diff --git a/config/simple-deprules.d/selfdeps.d/sci-CRAN b/config/simple-deprules.d/selfdeps.d/sci-CRAN
new file mode 100644
index 0000000..5935939
--- /dev/null
+++ b/config/simple-deprules.d/selfdeps.d/sci-CRAN
@@ -0,0 +1,40 @@
+#deptype pkg,selfdep
+
+sci-CRAN/csound {
+   A valid copy of the Csound library must be present.Csound can be downloaded from http://www.csounds.com. Thelibrary is included in the default Windows and Mac OS Xdistributions
+   playitbyr creates sound using the csound package
+   which requires the free and open source software synthesizerCsound
+}
+
+~sci-CRAN/mimR :: mim
+
+sci-CRAN/quadprog :: portfolio.optim needs package quadprog
+
+sci-CRAN/rgl :: rgl packages for rendering
+
+sci-CRAN/MVA {
+   white.test needs packagemva
+   white.test needs package mva
+}
+
+~sci-CRAN/sgeostat {
+   sgeostat.
+   geostat.
+}
+
+# the following rule is _not_ correct
+#  (the dependency strings listed here want the "xgobi" program from
+#   http://www.research.att.com/areas/stat/xgobi/, not the R package)
+#
+## sci-CRAN/xgobi {
+##    xgobi must be installed additionally
+##    xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/
+## }
+
+~sci-CRAN/BayesFactor :: BayesFactorPCL
+
+>=sci-CRAN/adimpro-0.4.2 :: adimpro (>= 0.4.2)The R-package 'adimpro' (for reading
+
+sci-CRAN/adimpro {
+   The R-package 'adimpro' (for reading
+}