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author | 2013-01-27 13:11:57 -0700 | |
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committer | 2013-01-27 13:11:57 -0700 | |
commit | b662d144fda85060e932f5bd7a4c4984fa9f652c (patch) | |
tree | dc52aa24c5d776d52606fc17d7646e4c0af5ac99 /config | |
parent | Update TODO (diff) | |
download | R_overlay-b662d144fda85060e932f5bd7a4c4984fa9f652c.tar.gz R_overlay-b662d144fda85060e932f5bd7a4c4984fa9f652c.tar.bz2 R_overlay-b662d144fda85060e932f5bd7a4c4984fa9f652c.zip |
More rules added0.2.2
Diffstat (limited to 'config')
-rw-r--r-- | config/simple-deprules.d/dev-libs | 5 | ||||
-rw-r--r-- | config/simple-deprules.d/ignored_text | 9 | ||||
-rw-r--r-- | config/simple-deprules.d/media | 7 | ||||
-rw-r--r-- | config/simple-deprules.d/nvidia | 5 | ||||
-rw-r--r-- | config/simple-deprules.d/sci | 7 | ||||
-rw-r--r-- | config/simple-deprules.d/sci-libs | 2 | ||||
-rw-r--r-- | config/simple-deprules.d/selfdeps | 4 | ||||
-rw-r--r-- | config/simple-deprules.d/sys | 18 |
8 files changed, 52 insertions, 5 deletions
diff --git a/config/simple-deprules.d/dev-libs b/config/simple-deprules.d/dev-libs index 05e4d3b..0303be7 100644 --- a/config/simple-deprules.d/dev-libs +++ b/config/simple-deprules.d/dev-libs @@ -16,7 +16,10 @@ dev-libs/boost { The Boost 'program_options' library(http://boost.org) is required. } -~dev-libs/glib :: glib +~dev-libs/glib { + glib + glib2 +} ~dev-libs/gmp { libgmp diff --git a/config/simple-deprules.d/ignored_text b/config/simple-deprules.d/ignored_text index 34f11eb..d6effd6 100644 --- a/config/simple-deprules.d/ignored_text +++ b/config/simple-deprules.d/ignored_text @@ -29,6 +29,15 @@ rgdal OSX binary packages are also available at the samesite. rgdal OSX binary packages are also available at the same site. probably) + Linux and Mac + MPICH2 (>= 1.4.1p1) on Windows + which is included with standard Mac and Windowsinstallations of Csound. Some Linux distributions package thelibrary file separately from the executible + playitbyr creates sound using the csound package + which requires the free and open source software synthesizerCsound + A valid copy of the Csound library must present.Csound can be downloaded Thelibrary is included in the Windows and Mac OS X binaries + binary Linux distributions often package the library separatelyfrom the executible file + so for instance on Debian and Ubuntuyou would need the "libcsound64-dev" package. + For the MERLIN wrapper } ! :: None diff --git a/config/simple-deprules.d/media b/config/simple-deprules.d/media index 5692eac..86790ab 100644 --- a/config/simple-deprules.d/media +++ b/config/simple-deprules.d/media @@ -2,7 +2,10 @@ ~media-sound/csound :: csound -~media-gfx/imagemagick :: imagemagick +~media-gfx/imagemagick { + imagemagick + Image Magick (for reading non PPM format) +} media-gfx/graphviz :: dot from graphviz ~media-gfx/graphviz { @@ -20,3 +23,5 @@ virtual/ffmpeg { FFmpeg(http://ffmpeg.org) for saveVideo() ffmpeg } + +media-gfx/dcraw :: dcraw(for reading RAW images). diff --git a/config/simple-deprules.d/nvidia b/config/simple-deprules.d/nvidia index a508e1b..3ed7ed6 100644 --- a/config/simple-deprules.d/nvidia +++ b/config/simple-deprules.d/nvidia @@ -6,6 +6,7 @@ dev-util/nvidia-cuda-toolkit { Nvidia CUDAToolkit (>= release 3.0) Nvidia's CUDA toolkit (>= release 2.3) NVIDIA CUDA Toolkit 3.1 or above + NVIDIA CUDAtoolkit } # FIXME cuda-toolkit or sdk? @@ -22,6 +23,10 @@ dev-util/nvidia-cuda-toolkit { Nvidia's CUDA toolkit (release >= 4.1) } +>=dev-util/nvidia-cuda-toolkit-4.5 { + Nvidia's CUDA toolkit (>= release 4.5) +} + >=x11-drivers/nvidia-drivers-270 { Nvidia CUDA driver (>= 270.xx.xx) } diff --git a/config/simple-deprules.d/sci b/config/simple-deprules.d/sci index 4728a8d..40db728 100644 --- a/config/simple-deprules.d/sci +++ b/config/simple-deprules.d/sci @@ -9,7 +9,10 @@ # == math == -~sci-mathematics/glpk :: glpk +~sci-mathematics/glpk { + glpk + GLPK library package (e.g. +} ~sci-mathematics/jags :: jags sci-mathematics/jags :: jags (see http://mcmc-jags.sourceforge.net) @@ -51,3 +54,5 @@ sci-physics/root { # == visualization == ~sci-visualization/ggobi :: ggobi + +sci-biology/merlin :: MERLIN(www.sph.umich.edu/csg/abecasis/merlin) must be installed andpointed to in the PATH environment variable. diff --git a/config/simple-deprules.d/sci-libs b/config/simple-deprules.d/sci-libs index cb48d04..ea1f25f 100644 --- a/config/simple-deprules.d/sci-libs +++ b/config/simple-deprules.d/sci-libs @@ -20,7 +20,7 @@ sci-libs/gdal { } ~sci-libs/gdal :: gdal -~sci-libs/geos :: { +~sci-libs/geos { geos for building from source: GEOS } diff --git a/config/simple-deprules.d/selfdeps b/config/simple-deprules.d/selfdeps index f4e77c7..6a8bf17 100644 --- a/config/simple-deprules.d/selfdeps +++ b/config/simple-deprules.d/selfdeps @@ -38,7 +38,7 @@ sci-R/quadprog :: portfolio.optim needs package quadprog sci-R/rgl :: rgl packages for rendering -~sci-R/sgeostat :: { +~sci-R/sgeostat { sgeostat. geostat. } @@ -53,3 +53,5 @@ sci-R/xgobi { xgobi must be installed additionally xgobi & xgvis programs: http://www.research.att.com/areas/stat/xgobi/ } + +~sci-R/BayesFactor :: BayesFactorPCL diff --git a/config/simple-deprules.d/sys b/config/simple-deprules.d/sys index df2ad0c..482c0e6 100644 --- a/config/simple-deprules.d/sys +++ b/config/simple-deprules.d/sys @@ -18,3 +18,21 @@ sys-libs/zlib :: zlib (optional) ! { rgl packages for rendering } + +# Some packages list Rcpp in system dependencies +~sci-R/Rcpp :: Rcpp + +# Split across multiple lines, next line adds Linux and Mac +>=sys-cluster/openmpi-1.5.4 :: OpenMPI (>= 1.5.4) on Solaris + +sci-R/rJava :: JRI + +~app-text/pandoc :: Pandoc (http://johnmacfarlane.net/pandoc) forexporting markdown files to other formats. + +>=dev-tcltk/tktable-2.9 :: Tktable (>= 2.9 + +>=app-text/aspell-0.60 :: aspell (>= 0.60 + +dev-libs/openssl :: OpenSSL library + +~app-crypt/dieharder :: DieHarder library |