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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-27 13:38:58 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-04-27 13:38:58 +0200 |
| commit | aa013962dcd3a5c45b467c96cda43c4bd8e33fad (patch) | |
| tree | 17c297c19fbda8aee10511b7071bbc9d4298ecde /sci-biology/BRAKER | |
| parent | sci-biology/minced: new package; the /usr/bin/minced wrapper for the minced.j... (diff) | |
| download | sci-aa013962dcd3a5c45b467c96cda43c4bd8e33fad.tar.gz sci-aa013962dcd3a5c45b467c96cda43c4bd8e33fad.tar.bz2 sci-aa013962dcd3a5c45b467c96cda43c4bd8e33fad.zip | |
sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't locate Scalar/Util/Numeric.pm in @INC (you may need to install the Scalar::Util::Numeric module)
Package-Manager: portage-2.2.18
Diffstat (limited to 'sci-biology/BRAKER')
| -rw-r--r-- | sci-biology/BRAKER/BRAKER-20150330.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/BRAKER/ChangeLog | 11 | ||||
| -rw-r--r-- | sci-biology/BRAKER/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/BRAKER/metadata.xml | 9 |
4 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/BRAKER/BRAKER-20150330.ebuild b/sci-biology/BRAKER/BRAKER-20150330.ebuild new file mode 100644 index 000000000..9ee5465a0 --- /dev/null +++ b/sci-biology/BRAKER/BRAKER-20150330.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit perl-module + +DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" +# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf +HOMEPAGE="http://bioinf.uni-greifswald.de/augustus/downloads" +SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz -> ${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND} + virtual/perl-Scalar-List-Utils" + +S="${WORKDIR}" + +src_install(){ + perl_set_version + dobin *.pl + insinto ${VENDOR_LIB}/${PN} + doins *.pm + dodoc README.braker +} diff --git a/sci-biology/BRAKER/ChangeLog b/sci-biology/BRAKER/ChangeLog new file mode 100644 index 000000000..0a1fbb2ce --- /dev/null +++ b/sci-biology/BRAKER/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for sci-biology/BRAKER +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*BRAKER-20150330 (27 Apr 2015) + + 27 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +BRAKER-20150330.ebuild, +metadata.xml: + sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't + locate Scalar/Util/Numeric.pm in @INC (you may need to install the + Scalar::Util::Numeric module) diff --git a/sci-biology/BRAKER/Manifest b/sci-biology/BRAKER/Manifest new file mode 100644 index 000000000..d4e70141e --- /dev/null +++ b/sci-biology/BRAKER/Manifest @@ -0,0 +1 @@ +DIST BRAKER-20150330.tar.gz 29237 SHA256 9229862127c7b81e47c4947a7d9b34221c2eb0a41b523c20e7e948deb16e6b80 SHA512 bbb1a29827616d43acd4c19953ae719f0269974cd1ea11fa551c7f8664d6702ed8787f64d82f31fbd045c0ac8208278190587cf6447283dfc865ab4819ca424c WHIRLPOOL 2ffad5d89ca7cd04339bc1761774dfc50037f77fce066105b08122e5dc3a77a9267a7a6c29e47255f1820626aa294181c7ec00166f8f01ecab4ab9ef88722159 diff --git a/sci-biology/BRAKER/metadata.xml b/sci-biology/BRAKER/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/BRAKER/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |