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authorAndrey Kislyuk <kislyuk@gmail.com>2012-01-08 03:10:22 -0500
committerAndrey Kislyuk <weaver@gentoo.org>2012-01-08 03:10:22 -0500
commitf232fc33ddad7f0e36961486a4c6125a62feae29 (patch)
tree284fe156b4d58154273ce814aac8d0330a550288 /sci-biology/igv
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New package, ebuild written by me
Diffstat (limited to 'sci-biology/igv')
-rw-r--r--sci-biology/igv/ChangeLog7
-rw-r--r--sci-biology/igv/Manifest2
-rw-r--r--sci-biology/igv/igv-2.0.32.ebuild35
-rw-r--r--sci-biology/igv/metadata.xml9
4 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/igv/ChangeLog b/sci-biology/igv/ChangeLog
new file mode 100644
index 000000000..69f3a962c
--- /dev/null
+++ b/sci-biology/igv/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/igv
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 08 Jan 2012; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
+ New package, ebuild written by me
+
diff --git a/sci-biology/igv/Manifest b/sci-biology/igv/Manifest
new file mode 100644
index 000000000..7eaca8703
--- /dev/null
+++ b/sci-biology/igv/Manifest
@@ -0,0 +1,2 @@
+EBUILD igv-2.0.32.ebuild 822 RMD160 db88edb421d3fa338c1ba0803ac34524d526aa34 SHA1 6a6330359806b8a89396b1a95abff054152c0cb7 SHA256 62e09868f0d3ebf03d79b5e6cfdde915b22f55d3234073b272fbea063c330030
+MISC igv-2.0.32.ebuild~ 921 RMD160 d7d05bab7b71325bcec98ac6e7237c587c51756f SHA1 81e2b15ac7c9bb8a0998289ee69045772db0b162 SHA256 ff7ab04f934ea56d489ca081e89864821116abae8092970cc3ac08f4b74de9f5
diff --git a/sci-biology/igv/igv-2.0.32.ebuild b/sci-biology/igv/igv-2.0.32.ebuild
new file mode 100644
index 000000000..ef2dc7fd8
--- /dev/null
+++ b/sci-biology/igv/igv-2.0.32.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+#ESVN_REPO_URI="http://igv.googlecode.com/svn/trunk"
+ESVN_REPO_URI="http://igv.googlecode.com/svn/tags/Version_${PV}"
+
+EANT_BUILD_TARGET="all"
+JAVA_ANT_REWRITE_CLASSPATH="true"
+EANT_NEEDS_TOOLS="true"
+WANT_ANT_TASKS="ant-apache-bcel"
+
+inherit subversion java-pkg-2 java-ant-2
+
+DESCRIPTION="Integrative Genomics Viewer"
+HOMEPAGE="http://www.broadinstitute.org/igv/"
+SRC_URI=""
+LICENSE="LGPL-2.1"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64"
+
+COMMON_DEPS=""
+DEPEND=">=virtual/jdk-1.6
+ ${COMMON_DEPS}"
+RDEPEND=">=virtual/jre-1.6
+ ${COMMON_DEPS}"
+
+src_install() {
+ java-pkg_newjar igv.jar
+ for i in lib/*.jar; do java-pkg_dojar $i; done
+ java-pkg_dolauncher igv --jar igv.jar --main org.broad.igv.ui.Main
+}
diff --git a/sci-biology/igv/metadata.xml b/sci-biology/igv/metadata.xml
new file mode 100644
index 000000000..3302123e5
--- /dev/null
+++ b/sci-biology/igv/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
+</pkgmetadata>