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authorJustin Lecher <jlec@gentoo.org>2015-06-15 09:21:37 +0200
committerJustin Lecher <jlec@gentoo.org>2015-06-15 09:21:37 +0200
commit6f9bc02910243a77c9c67f768877a511868b8706 (patch)
treeb6838623b7849668535c7de0d7beb15360534cc2 /sci-biology/manatee-igs
parentsci-biology/glean: Fix dependency problems due to recent mask of perl-core pa... (diff)
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sci-biology/manatee-igs: Fix dependency problems due to recent mask of perl-core packages
Package-Manager: portage-2.2.20
Diffstat (limited to 'sci-biology/manatee-igs')
-rw-r--r--sci-biology/manatee-igs/ChangeLog7
-rw-r--r--sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild65
2 files changed, 38 insertions, 34 deletions
diff --git a/sci-biology/manatee-igs/ChangeLog b/sci-biology/manatee-igs/ChangeLog
index 2c85c80cd..8a60b082e 100644
--- a/sci-biology/manatee-igs/ChangeLog
+++ b/sci-biology/manatee-igs/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-biology/manatee-igs
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 15 Jun 2015; Justin Lecher <jlec@gentoo.org> manatee-igs-2.23.1.ebuild:
+ sci-biology/manatee-igs: Fix dependency problems due to recent mask of perl-
+ core packages
+
29 Aug 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
manatee-igs-2.23.1.ebuild:
Both versions of manatee have same license, so rename unify the license
@@ -24,4 +28,3 @@
08 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+manatee-igs-2.23.1.ebuild, +metadata.xml:
new package for prokaryotic genome annotation and editing
-
diff --git a/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild b/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild
index b858a9d5b..fb0fa9f2b 100644
--- a/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild
+++ b/sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild
@@ -1,13 +1,14 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=5
DESCRIPTION="IGS-modified version of the genome annotation tool using Chado database schema"
HOMEPAGE="http://manatee.sourceforge.net/igs"
-SRC_URI="http://sourceforge.net/projects/manatee/files/igs_manatee/"${PV}"/manatee-"${PV}"_linux.tgz
- http://manatee.sourceforge.net/igs/docs/README_Linux.txt"
+SRC_URI="
+ http://sourceforge.net/projects/manatee/files/igs_manatee/"${PV}"/manatee-"${PV}"_linux.tgz
+ http://manatee.sourceforge.net/igs/docs/README_Linux.txt"
LICENSE="Artistic-Manatee"
SLOT="0"
@@ -15,35 +16,35 @@ KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND="
- >=dev-libs/expat-1.95.8
- >=media-libs/gd-2.0.34
- virtual/perl-CGI
- dev-perl/Bio-DB-Das-Chado
- dev-perl/DBI
- dev-perl/DBD-mysql
- dev-perl/XML-Parser
- dev-perl/XML-Twig
- dev-perl/XML-Simple
- dev-perl/XML-Writer
- dev-perl/HTML-Template
- dev-perl/Tree-DAG_Node
- virtual/perl-File-Spec
- virtual/perl-Data-Dumper
- dev-perl/GD
- dev-perl/GDTextUtil
- dev-perl/GDGraph
- virtual/perl-Storable
- dev-perl/Log-Log4perl
- dev-perl/Log-Cabin
- dev-perl/DateManip
- dev-perl/IO-Tee
- dev-perl/MLDBM
- dev-perl/JSON
- dev-perl/JSON-Any
- sci-biology/bioperl"
+ >=dev-libs/expat-1.95.8
+ >=media-libs/gd-2.0.34
+ dev-perl/CGI
+ dev-perl/Bio-DB-Das-Chado
+ dev-perl/DBI
+ dev-perl/DBD-mysql
+ dev-perl/XML-Parser
+ dev-perl/XML-Twig
+ dev-perl/XML-Simple
+ dev-perl/XML-Writer
+ dev-perl/HTML-Template
+ dev-perl/Tree-DAG_Node
+ virtual/perl-File-Spec
+ virtual/perl-Data-Dumper
+ dev-perl/GD
+ dev-perl/GDTextUtil
+ dev-perl/GDGraph
+ virtual/perl-Storable
+ dev-perl/Log-Log4perl
+ dev-perl/Log-Cabin
+ dev-perl/DateManip
+ dev-perl/IO-Tee
+ dev-perl/MLDBM
+ dev-perl/JSON
+ dev-perl/JSON-Any
+ sci-biology/bioperl"
RDEPEND="${DEPEND}
- >=dev-db/mysql-5.0
- >=www-servers/apache-2.2"
+ >=dev-db/mysql-5.0
+ >=www-servers/apache-2.2"
S="${WORKDIR}"/manatee-"${PV}"_linux