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| author |   Alexey Shvetsov <alexxy@gentoo.org> | 2019-10-30 11:03:26 +0300 |
|---|---|---|
| committer | Alexey Shvetsov <alexxy@gentoo.org> | 2019-10-30 11:03:26 +0300 |
| commit | 669fb165704ebae28b3781a18aa215d6f07c8340 (patch) | |
| tree | 665b9838df757c9fb40112df772bdec6476be407 /sci-chemistry/relion | |
| parent | sci-chemistry/MotionCor2: Add motioncor2 (diff) | |
| download | sci-669fb165704ebae28b3781a18aa215d6f07c8340.tar.gz sci-669fb165704ebae28b3781a18aa215d6f07c8340.tar.bz2 sci-669fb165704ebae28b3781a18aa215d6f07c8340.zip | |
sci-chemistry/relion: Add relion
Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
Diffstat (limited to 'sci-chemistry/relion')
| -rw-r--r-- | sci-chemistry/relion/Manifest | 1 | ||||
| -rw-r--r-- | sci-chemistry/relion/metadata.xml | 16 | ||||
| -rw-r--r-- | sci-chemistry/relion/relion-3.0.8.ebuild | 45 |
3 files changed, 62 insertions, 0 deletions
diff --git a/sci-chemistry/relion/Manifest b/sci-chemistry/relion/Manifest new file mode 100644 index 000000000..d433f0547 --- /dev/null +++ b/sci-chemistry/relion/Manifest @@ -0,0 +1 @@ +DIST relion-3.0.8.tar.gz 2149738 BLAKE2B dfe322a974a3960612168a84078580ac4adb844b5b044dbd88022fc5afdc87717b3d122224b9b210266d6a7018d03888401618b23bb8022354060b8bd4669f63 SHA512 d72e527801fb6fd7632272350e3b21750df2758d067a4e0da13f9323cdf1ae5da86e0c5fc28c23bce5a15ac90c8c23dfe1c02180970c17ac89a658efee6584a1 diff --git a/sci-chemistry/relion/metadata.xml b/sci-chemistry/relion/metadata.xml new file mode 100644 index 000000000..8fe354309 --- /dev/null +++ b/sci-chemistry/relion/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="project"> + <email>sci-chemistry@gentoo.org</email> + <name>Gentoo Chemistry Project</name> + </maintainer> + <maintainer type="person"> + <email>alexxy@gentoo.org</email> + <name>Alexey Shvetsov</name> + </maintainer> + <use> + <flag name="gui">Enable relion gui</flag> + <flag name="cuda">Enable CUDA support</flag> + </use> +</pkgmetadata> diff --git a/sci-chemistry/relion/relion-3.0.8.ebuild b/sci-chemistry/relion/relion-3.0.8.ebuild new file mode 100644 index 000000000..34b1277a7 --- /dev/null +++ b/sci-chemistry/relion/relion-3.0.8.ebuild @@ -0,0 +1,45 @@ +# Copyright 2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake-utils + +DESCRIPTION="Image-processing software for cryo-electron microscopy" +HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/relion" +SRC_URI="https://github.com/3dem/relion/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="+gui cuda" + +DEPEND=" + gui? ( x11-libs/fltk ) + dev-cpp/tbb + sci-libs/fftw:3.0 + media-libs/tiff + virtual/mpi + cuda? ( dev-util/nvidia-cuda-toolkit ) + " +RDEPEND="${DEPEND}" +BDEPEND="${DEPEND}" + +src_prepare() { + # hack build type =D + sed 's:release:gentoo:g' -i CMakeLists.txt + cmake-utils_src_prepare +} + +src_configure() { + mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DALTCPU=ON + -DFORCE_OWN_FFTW=OFF + -DFORCE_OWN_FLTK=OFF + -DFORCE_OWN_TBB=OFF + -DCUDA=$(usex cuda) + -DGUI=$(usex gui) + ) + cmake-utils_src_configure +} |