x11-libs/xview bump and sci-chemistry/nmrpipe

7 files changed, 333 insertions, 0 deletions

diff --git a/x11-libs/xview/ChangeLog b/x11-libs/xview/ChangeLog
new file mode 100644
index 000000000..84009e26e
--- /dev/null
+++ b/x11-libs/xview/ChangeLog
@@ -0,0 +1,133 @@
+# ChangeLog for x11-libs/xview
+# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  03 Feb 2009; justin Lecher (jlec) <jlec@j-schmitz.net>
+  xview-3.2-r6.ebuild, -xview-3.2-r7.ebuild, xview-3.2-r8.ebuild:
+  included fix from bug 245409 Thanks to pva
+  added to sci overlay
+
+  03 Nov 2008; justin Lecher <justin@j-schmitz.net>
+  +files/CAN-2005-0076.patch, +files/lseek.diff, +metadata.xml,
+  +xview-3.2-r6.ebuild:
+  Taken over
+
+  18 Jun 2008; Jeremy Olexa <darkside@gentoo.org> xview-3.2-r6.ebuild:
+  Add missing dep x11-misc/xbitmaps to xview. bug #227587
+
+  21 Apr 2008; Christian Heim <phreak@gentoo.org> metadata.xml:
+  Fix up metadata.xml. If there's no maintainer for the package, the metadata
+  also needs to contain m-needed@g.o.
+
+  12 Sep 2007; Raúl Porcel <armin76@gentoo.org> -xview-3.2-r5.ebuild,
+  xview-3.2-r6.ebuild:
+  x86 stable wrt #192290 and remove old
+
+  22 Jul 2007; Donnie Berkholz <dberkholz@gentoo.org>; xview-3.2-r5.ebuild:
+  Drop virtual/x11 references.
+
+  01 Jul 2007; Diego Pettenò <flameeyes@gentoo.org> ChangeLog:
+  Once again, with passion.
+
+  01 Jul 2007; Diego Pettenò <flameeyes@gentoo.org> ChangeLog:
+  Regenerate digest to compensate Attic/ value in CVS header expansion.
+
+  01 Jul 2007; Diego Pettenò <flameeyes@gentoo.org> +xview-3.2-r6.ebuild:
+  Revision bump to fix building when /usr/X11R6 is missing, see bug #149712
+  and the long list of dupes.
+
+  29 Sep 2006; Olivier Fisette <ribosome@gentoo.org> xview-3.2-r5.ebuild:
+  Added missing dependency on imake.
+
+  01 Aug 2006; Olivier Fisette <ribosome@gentoo.org> -xview-3.2.ebuild,
+  -xview-3.2-r1.ebuild, -xview-3.2-r3.ebuild, -xview-3.2-r4.ebuild,
+  xview-3.2-r5.ebuild, -xview-3.2-r6.ebuild:
+  Backported fix for bug #67924 to the stable tree. Removed stale versions.
+
+*xview-3.2-r6 (01 Aug 2006)
+
+  01 Aug 2006; Olivier Fisette <ribosome@gentoo.org> +xview-3.2-r6.ebuild:
+  Added dependencies on Lucida Bright and Sun Cursor fonts. (Fixes bug
+  #67924.) These fonts are no longer provided by virtual/x11.
+
+  16 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>; xview-3.2.ebuild,
+  xview-3.2-r1.ebuild, xview-3.2-r3.ebuild, xview-3.2-r5.ebuild:
+  Fix for gcc 4.1. (#120910) Look for imake in the right place, fix by Octavio
+  Ruiz. No rev bump, since both result in compilation failures. Port remaining
+  ebuilds to modular X.
+
+*xview-3.2-r5 (19 Feb 2006)
+
+  19 Feb 2006; Olivier Fisette <ribosome@gentoo.org> +files/lseek.diff,
+  +xview-3.2-r5.ebuild:
+  Fixed conflicting type declarations for lseek in libxview.
+
+  25 Jan 2006; Patrick McLean <chutzpah@gentoo.org> xview-3.2-r4.ebuild:
+  Fix dependencies for modular X.
+
+  25 Jan 2006; Patrick McLean <chutzpah@gentoo.org> xview-3.2.ebuild,
+  xview-3.2-r1.ebuild, xview-3.2-r3.ebuild, xview-3.2-r4.ebuild:
+  Mask on amd64 due to bug #108261.
+
+  14 Dec 2005; Joshua Jackson <tsunam@gentoo.org> xview-3.2-r4.ebuild:
+  Stable on x86; bug #115452
+
+*xview-3.2-r4 (14 Aug 2005)
+
+  14 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +xview-3.2-r4.ebuild:
+  Fixed bug #88001: xview no longer builds its own versions of msgfmt and
+  xgettext.
+
+  28 Jun 2005; Michael Hanselmann <hansmi@gentoo.org> xview-3.2.ebuild,
+  xview-3.2-r1.ebuild, xview-3.2-r3.ebuild:
+  Removed from hppa (#78118).
+
+  01 Apr 2005; Bryan Østergaard <kloeri@gentoo.org> xview-3.2.ebuild,
+  xview-3.2-r1.ebuild, xview-3.2-r3.ebuild:
+  Mask alpha due to bug 78118.
+
+  17 Feb 2005; Gustavo Felisberto <humpback@gentoo.org>;
+  +files/CAN-2005-0076.patch, -xview-3.2-r2.ebuild:
+  Removed -r2 that did not work with xorg. Added -r3 that does not use the
+  debian patches and has a new HOMEPAGE and seems to be supported there. This
+  version from the new home still needed the CAN-2005-0076 patch. This was
+  tested with xorg 6.8.0-r4 and 6.8.2 on x86.
+
+*xview-3.2-r2 (17 Feb 2005)
+
+  17 Feb 2005; Gustavo Felisberto <humpback@gentoo.org>; +xview-3.2-r2.ebuild:
+  Adding -r2 with debian patch to solve security problem reported in bug #78118.
+
+  16 Jan 2005; Guy Martin <gmsoft@gentoo.org> xview-3.2-r1.ebuild:
+  Stable on hppa.
+
+  28 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
+  Change encoding to UTF-8 for GLEP 31 compliance
+
+  16 Dec 2004; Bryan Østergaard <kloeri@gentoo.org> xview-3.2-r1.ebuild:
+  Stable on alpha.
+
+  18 Nov 2004; <pyrania@gentoo.org> xview-3.2-r1.ebuild:
+  Marked stable on x86.
+
+*xview-3.2-r1 (02 Oct 2004)
+
+  02 Oct 2004; Bryan Østergaard <kloeri@gentoo.org> +xview-3.2-r1.ebuild:
+  Bump patches, new ebuild provided by genstef in #gentoo-bugs.
+
+  11 Jun 2004; Bryan Østergaard <kloeri@gentoo.org> xview-3.2.ebuild:
+  Stable on alpha.
+
+  30 Mar 2004; Chris Aniszczyk <zx@gentoo.org> metadata.xml, xview-3.2.ebuild:
+  Added metadata.xml
+
+  30 Mar 2004; Chris Aniszczyk <zx@gentoo.org> xview-3.2.ebuild:
+  Marking stable on hppa.
+
+  14 Mar 2004; Michael Sterrett <mr_bones_@gentoo.org> xview-3.2.ebuild:
+  don't assign to PN; tidy
+
+*xview-3.2 (02 AUG 2003)
+
+  02 AUG 2003; Maarten Thibaut <murphy@gentoo.org> xview-3.2.ebuild :
+  Initial import.
diff --git a/x11-libs/xview/Manifest b/x11-libs/xview/Manifest
new file mode 100644
index 000000000..92ddecd89
--- /dev/null
+++ b/x11-libs/xview/Manifest
@@ -0,0 +1,8 @@
+AUX CAN-2005-0076.patch 984 RMD160 46d0ff56c23b414bf566c27720aedfbaf7b0d8a7 SHA1 e64c6efe18525d3519dbb5453cd4211ac0b7b9b4 SHA256 f94cc69cc3156bf5c80b3fe920f2b505e3daac0cf598def8b0b763abc2d06813
+AUX lseek.diff 897 RMD160 c70b0ed6d846369a7dc1a1f4093186b6f51de64a SHA1 ddecf2527aa1b555b484e3da48fe6c03c7899b7b SHA256 4a0eb56dfadd48f839d2621804763d3dd550f978ac94500660f5cd45877da578
+AUX lseek2.diff 815 RMD160 008b5a039b5014b581d0699a3241142d2a019c1c SHA1 a1b6899ec1e77ce5888a3be6af49bb5b93bb1ce0 SHA256 077e3516cae73d8649b477250cf7f70c7c8f21ba36515f837a8a737d8501ead3
+DIST xview-3.2-gcc-4.1-v0.1.patch.bz2 8018 RMD160 0387c073d7f4c8303467f3065ba2a573fdb6710e SHA1 f06eb2412e4d61dffaee7db436527d7933a50931 SHA256 2b26f10122535eff43a4f87fc97ffb54eac88c312a3688b05bce806ce9a273ba
+DIST xview-3.2p1.4-19c.tar.gz 3350088 RMD160 6e0e90a737df7de8d30dbbd647527d599f13e8dd SHA1 1a2023945edef33ea4251fcb3b9e69bcf35a531c SHA256 ce05762918ccaa0bd86819e1347b57b6d0e5d515b148f9f740d3ffd1fa9eea83
+EBUILD xview-3.2-r6.ebuild 3630 RMD160 354aba1eefb98be96218800e60861a92a31e87d6 SHA1 b147c1fba7ab2d318af0fa574f968e944f774f3a SHA256 cd2b1eb82c556997fdbdd92baebef56118393b5ad6274434b2553e25cfe7493b
+MISC ChangeLog 5022 RMD160 3fbdbd059b25f0eae2cebd5a9bedccec6d5a12ec SHA1 a157b30526742c77d9605399d65c01a910c489ea SHA256 e9123b0ae8a53056c7e862e1945c047d83e68a0ecb506414c679c4f7ebcd27f7
+MISC metadata.xml 273 RMD160 77dd0acbd8530bfceee840dfeccd1f4228e0460b SHA1 7c6794b74e4f357c0cd501266226eda09417d6ee SHA256 ed6f9e4b8aa59f68498bb75bf3be63a6de60feda167e4ceb12c7cb81bf8aac09
diff --git a/x11-libs/xview/files/CAN-2005-0076.patch b/x11-libs/xview/files/CAN-2005-0076.patch
new file mode 100644
index 000000000..53952e100
--- /dev/null
+++ b/x11-libs/xview/files/CAN-2005-0076.patch
@@ -0,0 +1,29 @@
+--- lib/libxview/base/xv_parse.c~	2005-01-15 17:11:54.000000000 +0100
++++ lib/libxview/base/xv_parse.c	2005-01-15 17:20:23.000000000 +0100
+@@ -312,7 +312,7 @@ xv_parse_one(app_name, argc, argv)
+     if (argc <= slot->num_args) {
+ 	char            dummy[128];
+ 
+-	(void) sprintf(dummy, 
++	(void) snprintf(dummy, sizeof(dummy),
+ 			XV_MSG("%s: missing argument after %s"), 
+ 			app_name,
+ 		       argv[0]);
+@@ -392,7 +392,7 @@ xv_parse_one(app_name, argc, argv)
+ 	if (defaults_lookup(argv[1], known_scales) == -1) {
+ 		char dummy[1024];
+ 		
+-		(void) sprintf(dummy, 
++		(void) snprintf(dummy, sizeof(dummy),
+ 			XV_MSG("%s: unknown scale \"%s\" used with %s option"),
+ 			       app_name, argv[1], argv[0]);
+ 		xv_error(XV_NULL,
+@@ -611,7 +611,7 @@ NegArg:
+     {
+ 	char            dummy[128];
+ 
+-	(void) sprintf(dummy, 
++	(void) snprintf(dummy, sizeof(dummy),
+ 		XV_MSG("%s: can't have negative argument %s after %s"),
+ 		       app_name, argv[bad_arg], argv[0]);
+ 	xv_error(XV_NULL,
diff --git a/x11-libs/xview/files/lseek.diff b/x11-libs/xview/files/lseek.diff
new file mode 100644
index 000000000..6a9ea51e6
--- /dev/null
+++ b/x11-libs/xview/files/lseek.diff
@@ -0,0 +1,26 @@
+--- lib/libxview/textsw/es_file.c.old	2006-02-18 23:26:14.000000000 -0500
++++ lib/libxview/textsw/es_file.c	2006-02-18 23:26:37.000000000 -0500
+@@ -119,9 +119,7 @@
+ extern int      errno, sys_nerr;
+ extern char    *sys_errlist[];
+ #endif
+-#ifndef __CYGWIN__
+-extern long     lseek();
+-#endif
++extern off_t     lseek();
+ 
+ static void update_read_buf();  /* update the read buf if overlaps write buf */
+ static Es_status es_file_commit();
+--- lib/libxview/sel/sel_agent.c.old	2006-02-18 23:17:33.000000000 -0500
++++ lib/libxview/sel/sel_agent.c	2006-02-18 23:18:23.000000000 -0500
+@@ -314,9 +314,7 @@
+     struct stat     stat_buf;
+     int             count, size;
+     char           *destp;
+-#ifndef __CYGWIN__
+-    extern long     lseek();
+-#endif
++    extern off_t     lseek();
+     if (fstat(fd, &stat_buf) != 0) {
+ 	perror(XV_MSG("Agent couldn't reply about a file"));
+ 	return SELN_FAILED;
diff --git a/x11-libs/xview/files/lseek2.diff b/x11-libs/xview/files/lseek2.diff
new file mode 100644
index 000000000..7f8715f78
--- /dev/null
+++ b/x11-libs/xview/files/lseek2.diff
@@ -0,0 +1,22 @@
+--- lib/libxview/textsw/es_file.c	1997-04-28 14:45:37.000000000 +0200
++++ lib/libxview/textsw/es_file.c.new	2009-02-03 09:51:34.000000000 +0100
+@@ -114,7 +114,7 @@
+ 
+ extern int      errno, sys_nerr;
+ extern char    *sys_errlist[];
+-extern long     lseek();
++extern off_t     lseek();
+ 
+ static void update_read_buf();  /* update the read buf if overlaps write buf */
+ static Es_status es_file_commit();
+--- lib/libxview/sel/sel_agent.c	1997-06-19 22:45:57.000000000 +0200
++++ lib/libxview/sel/sel_agent.c.new	2009-02-03 09:53:34.000000000 +0100
+@@ -309,7 +309,7 @@
+     struct stat     stat_buf;
+     int             count, size;
+     char           *destp;
+-    extern long     lseek();
++    extern off_t     lseek();
+ 
+     if (fstat(fd, &stat_buf) != 0) {
+ 	perror(XV_MSG("Agent couldn't reply about a file"));
diff --git a/x11-libs/xview/metadata.xml b/x11-libs/xview/metadata.xml
new file mode 100644
index 000000000..9b727ece3
--- /dev/null
+++ b/x11-libs/xview/metadata.xml
@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>maintainer-wanted</herd>
+	<maintainer>
+		<email>jlec@j-schmitz.net</email>
+		<name>Justin Lecher (jlec)</name>
+	</maintainer>
+</pkgmetadata>
+
diff --git a/x11-libs/xview/xview-3.2-r6.ebuild b/x11-libs/xview/xview-3.2-r6.ebuild
new file mode 100644
index 000000000..0d3849589
--- /dev/null
+++ b/x11-libs/xview/xview-3.2-r6.ebuild
@@ -0,0 +1,105 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/www/viewcvs.gentoo.org/raw_cvs/gentoo-x86/x11-libs/xview/Attic/xview-3.2-r6.ebuild,v 1.6 2008/12/21 09:03:33 ssuominen dead $
+
+inherit eutils toolchain-funcs
+
+MY_PN="${P}p1.4-19c"
+GCC_PATCHVER="0.1"
+
+DESCRIPTION="The X Window-System-based Visual/Integrated Environment for Workstations"
+HOMEPAGE="http://physionet.caregroup.harvard.edu/physiotools/xview/"
+LICENSE="XVIEW"
+# We use the xview tarball available from the X organization, but xfree86 appears
+# to be up and available more often so we use that (it's their primary mirror).
+SRC_URI="http://physionet.caregroup.harvard.edu/physiotools/xview/src/${MY_PN}.tar.gz
+		mirror://gentoo/${P}-gcc-4.1-v${GCC_PATCHVER}.patch.bz2"
+		# mirror://debian/pool/main/x/xview/${SRC_PATCH}.gz
+
+SLOT="0"
+IUSE=""
+KEYWORDS="-alpha -amd64 ~ppc ~sparc ~x86"
+
+RDEPEND="x11-libs/libXpm
+	x11-proto/xextproto
+	media-fonts/font-bh-75dpi
+	media-fonts/font-sun-misc
+	x11-misc/xbitmaps"
+
+DEPEND="${RDEPEND}
+	app-text/rman
+	x11-misc/gccmakedep
+	x11-misc/imake"
+
+S=${WORKDIR}/${MY_PN}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	# This is our compound patch derived from debian. We use it because:
+	#  * xview is a contribution made by Sun Microsystems (?) to the X community,
+	#    but fixes for it don't appear to be around other than in the other free
+	#    distributions.
+	#  * It does little harm, only some defaults are changed which we can redefine
+	#    anyway.
+	#
+	# SRC_PATCH="${PN}_3.2p1.4-16woody2.diff"
+	epatch "${FILESDIR}"/lseek.diff
+	epatch "${DISTDIR}"/${P}-gcc-4.1-v${GCC_PATCHVER}.patch.bz2
+
+	# Do not build xgettext and msgfmt since they are provided by the gettext
+	# package. Using the programs provided by xview breaks many packages
+	# including vim, grep and binutils.
+	sed -e 's/MSG_UTIL = xgettext msgfmt/#MSG_UTIL = xgettext msgfmt/' \
+		-i util/Imakefile || die "gettext sed failed"
+
+	# (#120910) Look for imake in the right place
+	sed -i -e 's:\/X11::' imake || die "imake sed failed"
+
+	sed -i -e 's:/usr/X11R6:/usr:' "${S}/config/XView.cf" "${S}/Build-XView.bash"
+
+	# Nasty hacks to force CC and CFLAGS
+	sed -e "s:^\(IMAKEINCLUDE=.*\)\"$:\1 -DCcCmd=$(tc-getCC)\":" \
+		-e "s:usr/lib/X11/config:usr/$(get_libdir)/X11/config:" -i Build-XView.bash
+	sed -e "s:\(.*STD_DEFINES =.*\)$:\1 -D_GNU_SOURCE ${CFLAGS}:" -i config/XView.obj
+	sed -e "s:\(.*define LibXViewDefines .*\)$:\1 -D_GNU_SOURCE ${CFLAGS}:" -i config/XView.cf
+	sed -e "s:^\(MORECCFLAGS.*\)$:\1 -D_GNU_SOURCE ${CFLAGS}:" -i clients/olvwm-4.1/Imakefile
+}
+
+src_compile() {
+	export OPENWINHOME="/usr"
+	export X11DIR="/usr"
+
+	# This is crazy and I know it, but wait till you read the code in
+	# Build-XView.bash.
+	bash Build-XView.bash libs \
+		|| die "building libs failed"
+	bash Build-XView.bash clients \
+		|| die "building clients failed"
+	bash Build-XView.bash contrib \
+		|| die "building contrib failed"
+	bash Build-XView.bash olvwm \
+		|| die "building olvwm failed"
+}
+
+src_install() {
+	export OPENWINHOME="/usr"
+	export X11DIR="/usr"
+	export DESTDIR="${D}"
+
+	bash Build-XView.bash instlibs \
+		|| die "installing libs failed"
+	bash Build-XView.bash instclients \
+		|| die "installing clients failed"
+	bash Build-XView.bash instcontrib \
+		|| die "installing contrib failed"
+	bash Build-XView.bash instolvwm \
+		|| die "installing olvwm failed"
+	cd "${D}"/usr
+
+	# The rest of the docs is already installed
+	cd "${S}"/doc
+	dodoc README xview-info olgx_api.txt olgx_api.ps sel_api.txt \
+		dnd_api.txt whats_new.ps
+	rm -rf "${D}"/usr/X11R6/share/doc/xview && rm -rf "${D}"/usr/X11R6/share/doc
+}