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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit distutils-r1
DESCRIPTION="Check de novo assembly for chimeric contigs/transcripts"
HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/barnacle"
#SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/1.0.0/"${P}".tar.gz"
SRC_URI="http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/${PV}/${P}.tar.gz"
# ftp://ftp.bcgsc.ca/supplementary/Barnacle_BMC_Genomics/aml_data.tar.gz
# http://www.bcgsc.ca/platform/bioinfo/software/barnacle/releases/1.0.3
LICENSE="bcca_2010"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}"
S="${S}"
# follow README.txt
src_compile(){
cd src || die
# Run setup.py to compile the portions of Barnacle that require compilation, and download and setup the default annotations
touch alignment_processing/gap_realigner_cluster || die # prevent compilation on a cluster
./setup.py localhost || die
}
src_install(){
dodoc README.txt
cd src || die
# do something
}
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