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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit python-single-r1 wxwidgets
DESCRIPTION="View and analyze genome sequences"
HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/"
SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz"
LICENSE="public-domain"
SLOT="0"
KEYWORDS=""
#KEYWORDS="~amd64 ~x86"
IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
RDEPEND="${PYTHON_DEPS}
app-arch/bzip2
app-text/sablotron
dev-cpp/muParser
dev-libs/boost:=
dev-libs/expat
dev-libs/icu
dev-libs/libxslt
lzo? ( dev-libs/lzo )
dev-libs/xalan-c
dev-libs/xerces-c
dev-util/cppunit
media-libs/freetype
media-libs/giflib
media-libs/tiff:0=
gnutls? ( net-libs/gnutls )
hdf5? ( sci-libs/hdf5 )
sys-fs/fuse
berkdb? ( >=sys-libs/db-4.3:* )
glut? ( virtual/glu )
opengl? ( virtual/opengl
media-libs/ftgl
media-libs/glew:= )
x11-libs/fltk
>=x11-libs/gtk+-2:*
x11-libs/wxGTK:*
mysql? ( virtual/mysql )
pcre? ( dev-libs/libpcre )
sqlite? ( dev-db/sqlite:3= )
ssl? ( dev-libs/openssl:0= )
sybase-ct? ( dev-db/freetds )
xml? ( dev-libs/libxml2:2= )
xpm? (
x11-libs/libXpm
virtual/jpeg:0=
media-libs/libpng:0=
sys-libs/zlib
)
"
DEPEND="${RDEPEND}"
# recycle ebuild logic from ncbi-tools++
S="${WORKDIR}"/gbench-src-"${PV}"
src_configure(){
# configure: error: --mandir=/usr/share/man: unknown option; use --help to show usage
# configure: error: --infodir=/usr/share/info: unknown option; use --help to show usage
# configure: error: --datadir=/usr/share: unknown option; use --help to show usage
# configure: error: --sysconfdir=/etc: unknown option; use --help to show usage
# configure: error: --localstatedir=/var/lib: unknown option; use --help to show usage
./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" --libdir="${EPREFIX}/usr/$(get_libdir)" CC="$(tc-getCC)" \
CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" || die
}
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