sci-biology/amos: Drop USE=qt4

Bug: https://bugs.gentoo.org/645140
Package-Manager: Portage-2.3.24, Repoman-2.3.6

1 files changed, 52 insertions, 0 deletions

diff --git a/sci-biology/amos/amos-3.1.0-r4.ebuild b/sci-biology/amos/amos-3.1.0-r4.ebuild
new file mode 100644
index 000000000000..0dbcaffd81da
--- /dev/null
+++ b/sci-biology/amos/amos-3.1.0-r4.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit autotools flag-o-matic python-single-r1
+
+DESCRIPTION="A Modular, Open-Source whole genome assembler"
+HOMEPAGE="http://amos.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
+	https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	${PYTHON_DEPS}
+	dev-perl/DBI
+	dev-perl/Statistics-Descriptive
+	sci-biology/mummer"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-gcc-4.7.patch
+	"${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
+	"${WORKDIR}"/${P}-fix-c++14.patch
+	"${FILESDIR}"/${P}-qa-Wformat.patch
+	"${FILESDIR}"/${P}-fix-build-system.patch
+)
+
+src_prepare() {
+	default
+	eautoreconf
+
+	# prevent GCC 6 log pollution due
+	# to hash_map deprecation in C++11
+	append-cxxflags -Wno-cpp
+}
+
+src_configure() {
+	econf --with-qmake-qt4=no
+}
+
+src_install() {
+	default
+	python_fix_shebang "${ED%/}"/usr/bin/goBambus2
+}