proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 50 insertions, 0 deletions

diff --git a/sci-visualization/circos/Manifest b/sci-visualization/circos/Manifest
new file mode 100644
index 000000000000..a749ed41ec85
--- /dev/null
+++ b/sci-visualization/circos/Manifest
@@ -0,0 +1 @@
+DIST circos-0.55.tgz 10163948 SHA256 3c9f3302b7becb8300d31153d9f8db5552491cb21f5b4cb2f3dc4ca9fd2a362d SHA512 3ebad082acd96b27281e6fcd996fb79022d982a93db59e1f3589a341df7f9855d7554fb92c88c41dc4679e7273d11c0372285a4059ec14a77f11d1d4014db9c1 WHIRLPOOL 4c242fbea59095f24d08eb18c9c9e145e6c7b783581297698a8b21d702019d621709a233bf4ba06928f00ced4eb9e50674f338d12265eaf948533a7ef0a2e251
diff --git a/sci-visualization/circos/circos-0.55.ebuild b/sci-visualization/circos/circos-0.55.ebuild
new file mode 100644
index 000000000000..8d443f8d5542
--- /dev/null
+++ b/sci-visualization/circos/circos-0.55.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+DESCRIPTION="Circular layout visualization of genomic and other data"
+HOMEPAGE="http://mkweb.bcgsc.ca/circos/"
+SRC_URI="http://mkweb.bcgsc.ca/circos/distribution/${P}.tgz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="dev-perl/Config-General
+	dev-perl/GD
+	dev-perl/Math-Bezier
+	dev-perl/Math-Round
+	dev-perl/Math-VecStat
+	dev-perl/Params-Validate
+	dev-perl/Readonly
+	dev-perl/regexp-common
+	>=dev-perl/Set-IntSpan-1.11
+	dev-perl/Graphics-ColorObject
+	dev-perl/List-MoreUtils"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	insinto /opt/${PN}
+	find * -maxdepth 0 -type d | xargs doins -r
+	exeinto /opt/${PN}/bin
+	doexe bin/circos bin/gddiag
+	dosym /opt/${PN}/bin/circos /usr/bin/circos
+	find * -maxdepth 0 -type f | xargs dodoc
+}
diff --git a/sci-visualization/circos/metadata.xml b/sci-visualization/circos/metadata.xml
new file mode 100644
index 000000000000..97aca918f628
--- /dev/null
+++ b/sci-visualization/circos/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-biology</herd>
+<longdescription>
+  Circos visualizes data in a circular layout — this makes Circos
+  ideal for exploring relationships between objects or
+  positions. Circos is ideal for creating publication-quality
+  infographics and illustrations with a high data-to-ink ratio, richly
+  layered data and pleasant symmetries. You have fine control each element
+  in the figure to tailor its focus points and detail to your audience.
+</longdescription>
+</pkgmetadata>